CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67892
CDX76635
CDY11420
CDY22582
CDY25110
CDY59208

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	CDY22582	AT1G32060.1	17947231
AT3G26650.1	CDY59208	AT1G32060.1	17947231
AT3G26650.1	CDX67892	AT3G62410.1	17947231
AT3G26650.1	CDX76635	AT3G62410.1	17947231
AT3G26650.1	CDY11420	AT3G62410.1	17947231
AT3G26650.1	CDY25110	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025219.1-P	Field mustard	plastid	98.68	98.68
CDY13649	Canola	plastid	98.16	98.16
CDY28536	Canola	plastid	97.89	97.89
CDY48981	Canola	plastid	92.11	95.11
AT3G26650.1	Thale cress	plastid	94.47	90.66
CDX98028	Canola	plastid	92.11	87.72
CDY19412	Canola	plastid	92.11	87.72
CDY26599	Canola	plastid	91.32	86.97
CDY16038	Canola	plastid	90.79	86.47
KRG94751	Soybean	extracellular, nucleus	87.37	82.38
KRH06774	Soybean	nucleus	87.11	82.13
VIT_14s0068g00680.t01	Wine grape	plastid	86.84	81.68
PGSC0003DMT400030050	Potato	cytosol	85.0	80.95
Os04t0459500-02	Rice	plastid	85.26	80.6
Zm00001d003429_P001	Maize	plastid	85.26	80.4
Solyc04g009030.2.1	Tomato	plastid	83.95	79.95
TraesCS2D01G322900.1	Wheat	plastid	83.95	79.55
TraesCS2B01G342200.1	Wheat	plastid	83.95	79.55
TraesCS2A01G344600.1	Wheat	golgi, plastid	83.68	79.3
GSMUA_Achr10P...	Banana	plastid	64.47	78.03
HORVU0Hr1G004830.6	Barley	plastid	83.68	77.94
Solyc02g020940.2.1	Tomato	plastid	82.63	76.77
KXG26468	Sorghum	plastid	84.21	76.56
Zm00001d025607_P001	Maize	cytosol, plastid	74.47	76.08
Zm00001d025599_P001	Maize	plastid	79.74	75.19
Zm00001d025593_P001	Maize	plastid	79.21	74.69
GSMUA_Achr6P16250_001	Banana	plastid	85.0	73.74
KRH70104	Soybean	plastid	51.05	70.29
CDY69523	Canola	cytosol	70.0	66.17
CDY35800	Canola	plastid	72.89	61.83
CDY49358	Canola	cytosol, mitochondrion	38.95	44.05
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	38.95	42.53
CDY42906	Canola	cytosol	39.21	42.21
CDX74199	Canola	endoplasmic reticulum	38.95	42.05
CDY25342	Canola	plastid	44.21	40.48
CDY22281	Canola	plastid	44.47	40.33
CDY50169	Canola	cytosol	39.47	40.32
CDY21098	Canola	cytosol	39.47	40.21
CDX79324	Canola	plastid	43.16	38.95
CDX67990	Canola	plastid	43.16	38.95
CDY35080	Canola	plastid	43.16	38.5
CDX98100	Canola	cytosol, mitochondrion, peroxisome	32.11	38.36
CDY33343	Canola	plastid	42.89	38.26
CDY30032	Canola	cytosol	39.47	38.17
CDY26651	Canola	mitochondrion, peroxisome	31.84	36.34
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	32.11	35.78
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	38.95	34.42
CDY29987	Canola	cytosol, peroxisome, plastid	31.84	32.18

Protein Annotations

MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078D3F6	EnsemblPlants:CDX83635	ProteinID:CDX83635
ProteinID:CDX83635.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00139311001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0004EE5A85
SEG:seg	:	:	:	:	:

Description

BnaC07g23750D

Coordinates

chrLK031833:+:1234374..1236181

Molecular Weight (calculated)

40905.8 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.026

Length

380 amino acids

Sequence
(BLAST)

001: MASATFSVPK PSLQGFTDFS GLRSSSASLP FAKKLSSDEF VSAVSFQTSA MGSSSGYRKG VTEAKLKVAI NGFGRIGRNF LRCWHGRKDS PFDIIAINDT
101: GGVKQASHLL KYDSTLGIFD ADVKPSGDAA LSVDGKIIKV VSNRNPSLLP WKELGIDIVI EGTGVFVDRE GDIPTYVVGV NADAYNPDEP IISNASCTTN
201: CLAPFVKVLD QKFGIIKGTM TTTHSYTGDQ RLLDASHRDL RRARAAALNI VPTSTGAAKA VALVLPNLKG KLNGIALRVP TPNVSVVDLV VQVTKKTFAE
301: EVNAAFRESA EKELKGILEV CDEPLVSVDF RCSDVSSTID SSLTMVMGDD MVKVIAWYDN EWGYSQRVVD LADIVANNWK

Best Arabidopsis Sequence Match ( AT1G12900.1 )
(BLAST)

001: MASATFSVAK PSLQGFSEFS GLRNSSALPF AKRSSSDEFV SFVSFQTSAM RSNGGYRKGV TEAKIKVAIN GFGRIGRNFL RCWHGRKDSP LDVVVINDTG
101: GVKQASHLLK YDSTLGIFDA DVKPSGDSAL SVDGKIIKIV SDRNPSNLPW GELGIDLVIE GTGVFVDRDG AGKHLQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYSHEDTI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPNLKGK LNGIALRVPT
301: PNVSVVDLVV QVSKKTFAEE VNAAFRDAAE KELKGILDVC DEPLVSVDFR CSDVSSTIDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANNWK

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.