Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY43716 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 97.44 | 98.56 |
| CDY49358 | Canola | cytosol, mitochondrion | 93.75 | 98.21 |
| Bra040146.1-P | Field mustard | cytosol | 93.18 | 97.04 |
| AT3G04120.1 | Thale cress | cytosol | 91.76 | 95.56 |
| AT1G13440.1 | Thale cress | cytosol | 91.76 | 95.56 |
| CDY42906 | Canola | cytosol | 94.6 | 94.33 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 88.07 | 91.72 |
| PGSC0003DMT400044944 | Potato | extracellular | 88.07 | 91.72 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 86.08 | 89.91 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 86.08 | 89.12 |
| Os04t0486600-01 | Rice | plastid | 85.23 | 89.02 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 80.4 | 88.99 |
| KRH31426 | Soybean | endoplasmic reticulum | 84.94 | 87.94 |
| CDY50169 | Canola | cytosol | 92.9 | 87.9 |
| KRH63724 | Soybean | nucleus | 84.38 | 87.87 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 84.38 | 87.87 |
| CDY21098 | Canola | cytosol | 92.9 | 87.67 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 84.09 | 87.57 |
| Os02t0601300-01 | Rice | plasma membrane | 83.81 | 87.54 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 83.81 | 87.28 |
| TraesCS7B01G213300.1 | Wheat | golgi | 83.52 | 87.24 |
| EES05377 | Sorghum | cytosol | 83.52 | 87.24 |
| TraesCS7D01G309500.1 | Wheat | cytosol | 83.52 | 87.24 |
| Zm00001d051001_P002 | Maize | cytosol | 83.24 | 86.94 |
| TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 82.67 | 86.35 |
| KXG24320 | Sorghum | cytosol | 82.39 | 86.05 |
| TraesCS6A01G213700.1 | Wheat | unclear | 82.39 | 86.05 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 81.82 | 85.46 |
| KXG20851 | Sorghum | cytosol | 81.82 | 85.46 |
| CDY26651 | Canola | mitochondrion, peroxisome | 80.68 | 85.29 |
| Os08t0126300-01 | Rice | cytosol | 81.53 | 85.16 |
| KXG21112 | Sorghum | cytosol | 81.53 | 85.16 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 82.39 | 85.04 |
| CDY30032 | Canola | cytosol | 93.47 | 83.72 |
| OQU77090 | Sorghum | cytosol | 52.27 | 82.88 |
| Zm00001d035156_P003 | Maize | cytosol | 81.82 | 82.52 |
| TraesCS7A01G313100.1 | Wheat | cytosol | 80.68 | 82.32 |
| TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 82.67 | 81.28 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 82.67 | 79.95 |
| TraesCS7B01G234400.1 | Wheat | cytosol | 77.27 | 79.3 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 82.1 | 76.86 |
| PGSC0003DMT400044945 | Potato | cytosol | 38.64 | 76.84 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 92.9 | 76.05 |
| HORVU7Hr1G074690.3 | Barley | extracellular, plasma membrane | 84.09 | 75.32 |
| GSMUA_Achr2P02600_001 | Banana | cytosol | 10.8 | 65.52 |
| GSMUA_Achr2P02610_001 | Banana | cytosol | 13.35 | 61.04 |
| CDY25342 | Canola | plastid | 69.6 | 59.04 |
| CDY22281 | Canola | plastid | 69.6 | 58.47 |
| CDX67990 | Canola | plastid | 69.6 | 58.19 |
| CDX79324 | Canola | plastid | 69.32 | 57.96 |
| Zm00001d017121_P001 | Maize | plastid | 83.24 | 57.45 |
| CDY33343 | Canola | plastid | 69.03 | 57.04 |
| CDY35080 | Canola | plastid | 69.03 | 57.04 |
| KRH37937 | Soybean | plastid | 12.22 | 48.86 |
| CDY19412 | Canola | plastid | 45.45 | 40.1 |
| CDX98028 | Canola | plastid | 45.45 | 40.1 |
| CDY16038 | Canola | plastid | 44.89 | 39.6 |
| CDY69523 | Canola | cytosol | 45.17 | 39.55 |
| CDY26599 | Canola | plastid | 44.6 | 39.35 |
| CDY28536 | Canola | plastid | 42.05 | 38.95 |
| CDX83635 | Canola | plastid | 42.05 | 38.95 |
| CDY13649 | Canola | plastid | 41.48 | 38.42 |
| CDY48981 | Canola | plastid | 39.2 | 37.5 |
| CDY35800 | Canola | plastid | 45.74 | 35.94 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:A0A078CDF2 |
| EnsemblPlants:CDX74199 | ProteinID:CDX74199 | ProteinID:CDX74199.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016620 |
| GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00111966001 | InterPro:GlycerAld/Erythrose_P_DH | InterPro:GlycerAld_3-P_DH_AS |
| InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 | PFAM:PF02800 |
| PIRSF:PIRSF000149 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF63 | MetaCyc:PWY-1042 |
| MetaCyc:PWY-5484 | MetaCyc:PWY-6901 | MetaCyc:PWY-7003 | SMART:SM00846 | SUPFAM:SSF51735 | SUPFAM:SSF55347 |
| SignalP:SignalP-noTM | TIGRFAMs:TIGR01534 | TMHMM:TMhelix | UniPathway:UPA00109 | UniParc:UPI0004EE88C6 | SEG:seg |
Description
BnaA03g28480D
Coordinates
chrLK031800:-:1744866..1747012
Molecular Weight (calculated)
38402.3 Da
IEP (calculated)
7.590
GRAVY (calculated)
0.002
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCILIVFGF LFWFVAGGKI KIGINGFGRI GRLVARVVLQ RDDVELVAVN DPFITTEYMT YMFKYDSVHG QWKHNELKVK DEKTLLFGEK PVTVFGIRNP
101: EDIPWGEAGA DFVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEHEYKS NLDIVSNASC TTNCLAPLAK VINDKFGIVE GLMTTVHSIT
201: ATQKTVDGPS MKDWRGGRAA SFNIIPSSTG AAKAVGKVLP QLNGKLTGMS FRVPTVDVSV VDLTVRLEKA ATYDQIKKAI KEESEGKLKG ILGYTEDDVV
301: STDFIGDSRS SIFDAKAGIA LSDNFVKLVS WYDNEWGYST RVVDLIVHMS KA
101: EDIPWGEAGA DFVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEHEYKS NLDIVSNASC TTNCLAPLAK VINDKFGIVE GLMTTVHSIT
201: ATQKTVDGPS MKDWRGGRAA SFNIIPSSTG AAKAVGKVLP QLNGKLTGMS FRVPTVDVSV VDLTVRLEKA ATYDQIKKAI KEESEGKLKG ILGYTEDDVV
301: STDFIGDSRS SIFDAKAGIA LSDNFVKLVS WYDNEWGYST RVVDLIVHMS KA
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.