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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • cytosol 3
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 extracellular: 27664331
msms PMID: 27664331 doi
P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla
Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_08s0007g03830.t01 cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13440.1 VIT_08s0007g03830.t01 AT2G36460.1 23316205
AT1G13440.1 VIT_08s0007g03830.t01 AT2G36460.1 23316205
AT3G04120.1 VIT_08s0007g03830.t01 AT2G36460.1 23316205
AT3G04120.1 VIT_08s0007g03830.t01 AT2G36460.1 23316205
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G13440.1 Thale cress cytosol 91.39 91.12
CDY49358 Canola cytosol, mitochondrion 90.21 90.48
Os04t0486600-01 Rice plastid 90.21 90.21
Bra040213.1-P Field mustard cytosol 90.21 89.94
VIT_01s0010g02460.t01 Wine grape cytosol 90.21 89.41
AT3G04120.1 Thale cress cytosol 89.61 89.35
Bra016729.1-P Field mustard cytosol 89.61 89.09
Bra040146.1-P Field mustard cytosol 89.32 89.05
Bra026904.1-P Field mustard cytosol 88.72 88.46
Bra019722.1-P Field mustard cytosol 77.15 88.44
CDX92059 Canola cytosol, endoplasmic reticulum, peroxisome 90.21 87.36
Os02t0601300-01 Rice plasma membrane 87.24 87.24
VIT_14s0171g00440.t01 Wine grape cytosol 86.35 86.35
TraesCS6D01G196300.2 Wheat golgi, nucleus 86.35 86.35
CDX74199 Canola endoplasmic reticulum 89.91 86.08
TraesCS6A01G213700.1 Wheat unclear 86.05 86.05
Zm00001d051001_P002 Maize cytosol 86.05 86.05
CDY42906 Canola cytosol 89.91 85.84
EES05377 Sorghum cytosol 85.76 85.76
KXG21112 Sorghum cytosol 84.27 84.27
Os08t0126300-01 Rice cytosol 84.27 84.27
Zm00001d049641_P001 Maize plasma membrane, plastid 83.98 83.98
KXG24320 Sorghum cytosol 83.98 83.98
TraesCS7D01G309500.1 Wheat cytosol 83.98 83.98
TraesCS7B01G213300.1 Wheat golgi 83.98 83.98
KXG20851 Sorghum cytosol 83.38 83.38
OQU77090 Sorghum cytosol 54.9 83.33
CDX98100 Canola cytosol, mitochondrion, peroxisome 77.15 81.76
Zm00001d035156_P003 Maize cytosol 84.27 81.38
TraesCS6B01G243700.1 Wheat endoplasmic reticulum 86.35 81.28
CDY50169 Canola cytosol 89.61 81.18
CDY21098 Canola cytosol 89.61 80.97
HORVU6Hr1G054520.3 Barley cytosol, mitochondrion 86.35 79.95
TraesCS7B01G234400.1 Wheat cytosol 81.31 79.88
TraesCS7A01G313100.1 Wheat cytosol 81.31 79.42
CDY26651 Canola mitochondrion, peroxisome 76.56 77.48
CDY30032 Canola cytosol 89.61 76.84
CDY21135 Canola cytosol, mitochondrion, peroxisome, plastid 77.74 76.83
HORVU7Hr1G074690.3 Barley extracellular, plasma membrane 83.98 72.01
VIT_14s0006g03030.t01 Wine grape extracellular 18.99 71.11
CDY29987 Canola cytosol, peroxisome, plastid 77.74 69.68
CDY16090 Canola cytoskeleton, cytosol, peroxisome 88.72 69.53
VIT_19s0085g00600.t01 Wine grape plastid 73.29 57.58
Zm00001d017121_P001 Maize plastid 85.76 56.67
VIT_14s0068g00680.t01 Wine grape plastid 45.99 38.37
VIT_18s0122g00960.t01 Wine grape plastid 48.96 36.42
VIT_18s0089g00560.t01 Wine grape mitochondrion, peroxisome, plastid 18.99 33.33
VIT_18s0089g00590.t01 Wine grape plastid 26.71 22.9
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12EntrezGene:100233024wikigene:100233024MapMan:2.1.1.4.1Gene3D:3.30.360.10
Gene3D:3.40.50.720ProteinID:ABM67588ProteinID:ABM67588.1ProteinID:ADP07947ProteinID:ADP07947.1ProteinID:CCB42886
ProteinID:CCB42886.1EMBL:EF192466UniProt:F6GSG7EMBL:FN594950EntrezGene:GAPDHwikigene:GAPDH
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0006006
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0016620GO:GO:0050661GO:GO:0051287
GO:GO:0055114EMBL:GU585870InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_cat
InterPro:Glyceraldehyde-3-P_DH_1InterPro:NAD(P)-bd_dom_sfPFAM:PF00044PFAM:PF02800PIRSF:PIRSF000149PRINTS:PR00078
ScanProsite:PS00071PANTHER:PTHR10836PANTHER:PTHR10836:SF63SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347
TIGR:TC52641TIGR:TC56459TIGRFAMs:TIGR01534UniParc:UPI000210A5D2ArrayExpress:VIT_17s0000g10430EnsemblPlantsGene:VIT_17s0000g10430
EnsemblPlants:VIT_17s0000g10430.t01unigene:Vvi.24290RefSeq:XP_002263145RefSeq:XP_002263145.2SEG:seg:
Description
Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6GSG7]
Coordinates
chr17:+:12807078..12811952
Molecular Weight (calculated)
36737.2 Da
IEP (calculated)
8.077
GRAVY (calculated)
-0.095
Length
337 amino acids
Sequence
(BLAST)
001: MGKIKIGING FGRIGRLVAR VALQRDDVEL VAVNDPFITT DYMTYMFKYD SVHGQWKHHE LKVKDSNTLL FGEKPVTVFG IRNPEEIPWG ETGAEFVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKPELHIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HSITATQKTV DGPSMKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPSLNGKL TGMAFRVPTV DVSVVDLTVR LEKAATYEQV KAAIKEESEG KMKGILGYTE DDVVSTDFIG DNRSSIFDAK
301: AGIALNEKFL KIVAWYDNEW GYSSRVIDLI VHMASCK
Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.