CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY43716	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98100	Canola	cytosol, mitochondrion, peroxisome	85.63	91.82
CDY26651	Canola	mitochondrion, peroxisome	85.34	87.39
CDY49358	Canola	cytosol, mitochondrion	85.04	86.31
Bra040213.1-P	Field mustard	cytosol	85.34	86.09
AT1G13440.1	Thale cress	cytosol	83.87	84.62
AT3G04120.1	Thale cress	cytosol	83.28	84.02
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	85.34	83.62
CDY42906	Canola	cytosol	85.34	82.44
CDX74199	Canola	endoplasmic reticulum	85.04	82.39
CDY29987	Canola	cytosol, peroxisome, plastid	90.03	81.65
PGSC0003DMT400044944	Potato	extracellular	80.06	80.77
Solyc05g014470.2.1	Tomato	extracellular, plastid	79.77	80.47
CDY50169	Canola	cytosol	85.34	78.23
CDY21098	Canola	cytosol	85.34	78.02
VIT_17s0000g10430.t01	Wine grape	extracellular	76.83	77.74
Os04t0486600-01	Rice	plastid	76.54	77.45
KRG97466	Soybean	endoplasmic reticulum, nucleus	76.83	77.06
KRH63724	Soybean	nucleus	76.25	76.92
KRH63725	Soybean	endoplasmic reticulum, nucleus	75.95	76.63
KRH54234	Soybean	endoplasmic reticulum, nucleus	75.66	76.33
KRH54227	Soybean	endoplasmic reticulum, nucleus	75.66	76.33
Os02t0601300-01	Rice	plasma membrane	75.07	75.96
KRH31426	Soybean	endoplasmic reticulum	75.66	75.88
CDY30032	Canola	cytosol	87.39	75.83
EES05377	Sorghum	cytosol	74.78	75.67
TraesCS7B01G213300.1	Wheat	golgi	74.49	75.37
TraesCS7D01G309500.1	Wheat	cytosol	74.49	75.37
OQU77090	Sorghum	cytosol	48.97	75.23
Zm00001d051001_P002	Maize	cytosol	74.19	75.07
TraesCS6D01G196300.2	Wheat	golgi, nucleus	73.9	74.78
TraesCS6A01G213700.1	Wheat	unclear	73.61	74.48
KXG24320	Sorghum	cytosol	73.31	74.18
PGSC0003DMT400044945	Potato	cytosol	38.42	74.01
KXG21112	Sorghum	cytosol	72.73	73.59
KXG20851	Sorghum	cytosol	72.73	73.59
Os08t0126300-01	Rice	cytosol	72.43	73.29
Zm00001d049641_P001	Maize	plasma membrane, plastid	72.43	73.29
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	74.78	71.23
Zm00001d035156_P003	Maize	cytosol	72.73	71.06
TraesCS7A01G313100.1	Wheat	cytosol	71.55	70.72
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	73.9	69.23
TraesCS7B01G234400.1	Wheat	cytosol	68.92	68.51
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	85.04	67.44
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	76.25	66.16
GSMUA_Achr2P02600_001	Banana	cytosol	9.38	55.17
GSMUA_Achr2P02610_001	Banana	cytosol	12.02	53.25
CDY25342	Canola	plastid	61.0	50.12
Zm00001d017121_P001	Maize	plastid	74.78	50.0
CDY22281	Canola	plastid	61.0	49.64
CDX67990	Canola	plastid	61.0	49.41
CDX79324	Canola	plastid	60.7	49.17
CDY33343	Canola	plastid	60.41	48.36
CDY35080	Canola	plastid	60.41	48.36
KRH37937	Soybean	plastid	10.56	40.91
CDX98028	Canola	plastid	39.0	33.33
CDY19412	Canola	plastid	39.0	33.33
CDY16038	Canola	plastid	38.42	32.83
CDY69523	Canola	cytosol	38.42	32.59
CDY26599	Canola	plastid	38.12	32.58
CDX83635	Canola	plastid	35.78	32.11
CDY28536	Canola	plastid	35.78	32.11
CDY13649	Canola	plastid	35.19	31.58
CDY48981	Canola	plastid	33.14	30.71
CDY35800	Canola	plastid	39.3	29.91

Protein Annotations

Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:50.1.2	GO:A0A078G3T0	UniProt:A0A078G3T0	EnsemblPlants:CDY21135
ProteinID:CDY21135	ProteinID:CDY21135.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00015321001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
TMHMM:TMhelix	UniParc:UPI0004EE87A7	SEG:seg	:	:	:

Description

BnaA01g33660DBnaA01g33660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3T0]

Coordinates

chrLK032116:-:182758..185567

Molecular Weight (calculated)

37842.5 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.108

Length

341 amino acids

Sequence
(BLAST)

001: MGRTCQTRCV SCQTDLTRPV LRFLKNLLVH RFLSANLIFN LSLSHITMAN GKIKIGINGF GRIGRLVARV VLQRDDVELV AVNDPFITTE YMTYMFKYDS
101: VHGQWKHHEL KVKDEKTLLF GEKPVTVFGI RNPEDIPWGE AGADFVVEST GVFTDKDKAA AHLKGGAKKV VISAPSKDAP MFVVGVNEHE YKSDLDIVSN
201: ASCTTNCLAP LAKVINDRFG IVEGLMTTVH SITATQKTVD GPSMKDWRVV DLTVRLEKAA TYDEIKKAIK EESEGKLKGI LGYTEDDVVS TDFVGDSRSS
301: IFDAKAGIAL SDNFVKLVSW YDNEWGYSTR VVDLIVHMSK A

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.