Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY43716 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49358 | Canola | cytosol, mitochondrion | 94.9 | 99.7 |
| Bra040213.1-P | Field mustard | cytosol | 94.9 | 99.11 |
| AT3G04120.1 | Thale cress | cytosol | 92.35 | 96.45 |
| AT1G13440.1 | Thale cress | cytosol | 92.35 | 96.45 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 94.62 | 95.98 |
| CDX74199 | Canola | endoplasmic reticulum | 94.33 | 94.6 |
| PGSC0003DMT400044944 | Potato | extracellular | 88.1 | 92.01 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 88.1 | 92.01 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 85.84 | 89.91 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 80.74 | 89.62 |
| Os04t0486600-01 | Rice | plastid | 85.27 | 89.32 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 85.84 | 89.12 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 84.99 | 88.76 |
| KRH63724 | Soybean | nucleus | 84.99 | 88.76 |
| Os02t0601300-01 | Rice | plasma membrane | 84.42 | 88.43 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 84.42 | 88.17 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 84.42 | 88.17 |
| KRH31426 | Soybean | endoplasmic reticulum | 84.7 | 87.94 |
| CDY50169 | Canola | cytosol | 92.35 | 87.63 |
| TraesCS7B01G213300.1 | Wheat | golgi | 83.57 | 87.54 |
| TraesCS7D01G309500.1 | Wheat | cytosol | 83.57 | 87.54 |
| EES05377 | Sorghum | cytosol | 83.57 | 87.54 |
| CDY21098 | Canola | cytosol | 92.35 | 87.4 |
| TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 83.29 | 87.24 |
| Zm00001d051001_P002 | Maize | cytosol | 83.29 | 87.24 |
| TraesCS6A01G213700.1 | Wheat | unclear | 83.0 | 86.94 |
| KXG24320 | Sorghum | cytosol | 82.44 | 86.35 |
| Os08t0126300-01 | Rice | cytosol | 82.15 | 86.05 |
| KXG20851 | Sorghum | cytosol | 81.87 | 85.76 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 81.59 | 85.46 |
| KXG21112 | Sorghum | cytosol | 81.59 | 85.46 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 82.44 | 85.34 |
| CDY26651 | Canola | mitochondrion, peroxisome | 80.17 | 84.98 |
| CDY30032 | Canola | cytosol | 93.2 | 83.72 |
| OQU77090 | Sorghum | cytosol | 52.12 | 82.88 |
| Zm00001d035156_P003 | Maize | cytosol | 81.87 | 82.81 |
| TraesCS7A01G313100.1 | Wheat | cytosol | 80.74 | 82.61 |
| TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 83.29 | 82.12 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 83.29 | 80.77 |
| TraesCS7B01G234400.1 | Wheat | cytosol | 77.9 | 80.17 |
| PGSC0003DMT400044945 | Potato | cytosol | 39.09 | 77.97 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 82.15 | 77.13 |
| HORVU7Hr1G074690.3 | Barley | extracellular, plasma membrane | 84.42 | 75.83 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 92.07 | 75.58 |
| GSMUA_Achr2P02600_001 | Banana | cytosol | 10.48 | 63.79 |
| GSMUA_Achr2P02610_001 | Banana | cytosol | 13.31 | 61.04 |
| CDY25342 | Canola | plastid | 69.69 | 59.28 |
| CDY22281 | Canola | plastid | 69.69 | 58.71 |
| CDX67990 | Canola | plastid | 69.69 | 58.43 |
| CDX79324 | Canola | plastid | 69.41 | 58.19 |
| Zm00001d017121_P001 | Maize | plastid | 83.57 | 57.84 |
| CDY33343 | Canola | plastid | 69.12 | 57.28 |
| CDY35080 | Canola | plastid | 69.12 | 57.28 |
| KRH37937 | Soybean | plastid | 12.18 | 48.86 |
| CDY19412 | Canola | plastid | 45.04 | 39.85 |
| CDX98028 | Canola | plastid | 45.04 | 39.85 |
| CDY69523 | Canola | cytosol | 45.33 | 39.8 |
| CDY16038 | Canola | plastid | 44.48 | 39.35 |
| CDY28536 | Canola | plastid | 42.21 | 39.21 |
| CDX83635 | Canola | plastid | 42.21 | 39.21 |
| CDY26599 | Canola | plastid | 44.19 | 39.1 |
| CDY13649 | Canola | plastid | 41.64 | 38.68 |
| CDY48981 | Canola | plastid | 39.38 | 37.77 |
| CDY35800 | Canola | plastid | 45.89 | 36.16 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:A0A078HZ31 |
| UniProt:A0A078HZ31 | EnsemblPlants:CDY42906 | ProteinID:CDY42906 | ProteinID:CDY42906.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00075637001 |
| InterPro:GlycerAld/Erythrose_P_DH | InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00044 | PFAM:PF02800 | PIRSF:PIRSF000149 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 |
| PANTHER:PTHR10836:SF63 | MetaCyc:PWY-1042 | MetaCyc:PWY-5484 | MetaCyc:PWY-6901 | MetaCyc:PWY-7003 | SMART:SM00846 |
| SUPFAM:SSF51735 | SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | UniPathway:UPA00109 | UniParc:UPI0004EE9999 | SEG:seg |
Description
BnaC05g47450DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078HZ31]
Coordinates
chrLK032538:+:145951..148694
Molecular Weight (calculated)
38424.1 Da
IEP (calculated)
7.607
GRAVY (calculated)
-0.128
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKMGLPRT TCQPHAAGGK IKIGINGFGR IGRLVARVVL QRDDVELVAV NDPFITTEYM TYMFKYDSVH GQWKHHELKV KDEKTLLFGE KPVTVFGIRN
101: PEDIPWAEAG ADFVVESTGV FTDKDKAAAH LKGGAKKVVI SAPSKDAPMF VVGVNEHEYK SDLDIVSNAS CTTNCLAPLA KVINDRFGIV EGLMTTVHSI
201: TATQKTVDGP SMKDWRGGRA ASFNIIPSST GAAKAVGKVL PQLNGKLTGM SFRVPTVDVS VVDLTVRLEK AATYDEIKKA IKEESEGKLK GILGYTEDDV
301: VSTDFVGDSR SSIFDAKAGI ALSDNFVKLV SWYDNEWGYS TRVVDLIVHM SKC
101: PEDIPWAEAG ADFVVESTGV FTDKDKAAAH LKGGAKKVVI SAPSKDAPMF VVGVNEHEYK SDLDIVSNAS CTTNCLAPLA KVINDRFGIV EGLMTTVHSI
201: TATQKTVDGP SMKDWRGGRA ASFNIIPSST GAAKAVGKVL PQLNGKLTGM SFRVPTVDVS VVDLTVRLEK AATYDEIKKA IKEESEGKLK GILGYTEDDV
301: VSTDFVGDSR SSIFDAKAGI ALSDNFVKLV SWYDNEWGYS TRVVDLIVHM SKC
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.