Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY43716 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 77.13 | 91.19 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 81.65 | 90.03 |
| CDY26651 | Canola | mitochondrion, peroxisome | 77.66 | 87.69 |
| CDY49358 | Canola | cytosol, mitochondrion | 77.13 | 86.31 |
| Bra040213.1-P | Field mustard | cytosol | 77.13 | 85.8 |
| AT1G13440.1 | Thale cress | cytosol | 75.8 | 84.32 |
| AT3G04120.1 | Thale cress | cytosol | 75.27 | 83.73 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 77.13 | 83.33 |
| CDY42906 | Canola | cytosol | 77.13 | 82.15 |
| CDX74199 | Canola | endoplasmic reticulum | 76.86 | 82.1 |
| PGSC0003DMT400044944 | Potato | extracellular | 72.61 | 80.77 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 72.34 | 80.47 |
| CDY50169 | Canola | cytosol | 77.93 | 78.76 |
| CDY21098 | Canola | cytosol | 77.93 | 78.55 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 69.68 | 77.74 |
| Os04t0486600-01 | Rice | plastid | 69.15 | 77.15 |
| KRH63724 | Soybean | nucleus | 69.15 | 76.92 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 69.41 | 76.76 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 68.88 | 76.63 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 68.62 | 76.33 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 68.62 | 76.33 |
| Os02t0601300-01 | Rice | plasma membrane | 68.09 | 75.96 |
| KRH31426 | Soybean | endoplasmic reticulum | 68.35 | 75.59 |
| CDY30032 | Canola | cytosol | 78.99 | 75.57 |
| TraesCS7B01G213300.1 | Wheat | golgi | 67.55 | 75.37 |
| TraesCS7D01G309500.1 | Wheat | cytosol | 67.55 | 75.37 |
| EES05377 | Sorghum | cytosol | 67.55 | 75.37 |
| OQU77090 | Sorghum | cytosol | 44.41 | 75.23 |
| Zm00001d051001_P002 | Maize | cytosol | 67.02 | 74.78 |
| TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 66.76 | 74.48 |
| TraesCS6A01G213700.1 | Wheat | unclear | 66.49 | 74.18 |
| KXG24320 | Sorghum | cytosol | 66.49 | 74.18 |
| PGSC0003DMT400044945 | Potato | cytosol | 34.84 | 74.01 |
| KXG20851 | Sorghum | cytosol | 65.96 | 73.59 |
| Os08t0126300-01 | Rice | cytosol | 65.69 | 73.29 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 65.69 | 73.29 |
| KXG21112 | Sorghum | cytosol | 65.69 | 73.29 |
| Zm00001d035156_P003 | Maize | cytosol | 65.96 | 71.06 |
| TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 67.55 | 70.95 |
| TraesCS7A01G313100.1 | Wheat | cytosol | 64.89 | 70.72 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 66.76 | 68.96 |
| TraesCS7B01G234400.1 | Wheat | cytosol | 62.23 | 68.22 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 77.13 | 67.44 |
| HORVU7Hr1G074690.3 | Barley | extracellular, plasma membrane | 70.21 | 67.18 |
| GSMUA_Achr2P02600_001 | Banana | cytosol | 8.24 | 53.45 |
| GSMUA_Achr2P02610_001 | Banana | cytosol | 10.9 | 53.25 |
| Zm00001d017121_P001 | Maize | plastid | 69.15 | 50.98 |
| CDY25342 | Canola | plastid | 55.05 | 49.88 |
| CDY22281 | Canola | plastid | 55.05 | 49.4 |
| CDX67990 | Canola | plastid | 55.05 | 49.17 |
| CDX79324 | Canola | plastid | 54.79 | 48.93 |
| CDY33343 | Canola | plastid | 54.52 | 48.12 |
| CDY35080 | Canola | plastid | 54.52 | 48.12 |
| KRH37937 | Soybean | plastid | 9.57 | 40.91 |
| CDX98028 | Canola | plastid | 35.11 | 33.08 |
| CDY19412 | Canola | plastid | 35.11 | 33.08 |
| CDY69523 | Canola | cytosol | 34.84 | 32.59 |
| CDY16038 | Canola | plastid | 34.57 | 32.58 |
| CDY26599 | Canola | plastid | 34.31 | 32.33 |
| CDX83635 | Canola | plastid | 32.18 | 31.84 |
| CDY28536 | Canola | plastid | 32.18 | 31.84 |
| CDY13649 | Canola | plastid | 31.65 | 31.32 |
| CDY48981 | Canola | plastid | 29.79 | 30.43 |
| CDY35800 | Canola | plastid | 35.37 | 29.69 |
Protein Annotations
| Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | MapMan:50.1.2 | GO:A0A078GXM8 | UniProt:A0A078GXM8 | EnsemblPlants:CDY29987 |
| ProteinID:CDY29987 | ProteinID:CDY29987.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016620 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00044509001 | InterPro:GlycerAld/Erythrose_P_DH | InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd |
| InterPro:GlycerAld_3-P_DH_cat | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 | PFAM:PF02800 | PIRSF:PIRSF000149 | PRINTS:PR00078 |
| ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF63 | SMART:SM00846 | SUPFAM:SSF51735 | SUPFAM:SSF55347 |
| UniParc:UPI0004EF2DDB | SEG:seg | : | : | : | : |
Description
BnaC01g40210DBnaC01g40210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXM8]
Coordinates
chrLK032247:+:309653..312329
Molecular Weight (calculated)
41738.4 Da
IEP (calculated)
8.090
GRAVY (calculated)
-0.076
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRLIASINF LINESGGNLV ILIKKILKIR SDLFPKKNSP PLDLTRTLRH VLLSFKYTSP RISLTHCFNL SLSANLIFDT LTMSNGKIKI GINGFGRIGR
101: LVARVVLQRD DVELVAVNDP FITTEYMTYM FKYDSVHGQW KHHELKVKDE KTLLFGEKPV TVFGIRNPED IPWGEAGADF VVESTGVFTD KDKAAAHLKG
201: GAKKVVISAP SKDAPMFVVG VNEHEYKSDL DIVSNASCTT NCLAPLAKVI NDRFGIVEGL MTTVHSITAT QKTVDGPSMK DWRVVDLTVR LEKAATYDEI
301: KKAIKEESEG KLKGILGYTE DDVVSTDFVG DSRSSIFDAK AGIALSDNFV KLVSWYDNEW GYSTRVVDLI VHMSKA
101: LVARVVLQRD DVELVAVNDP FITTEYMTYM FKYDSVHGQW KHHELKVKDE KTLLFGEKPV TVFGIRNPED IPWGEAGADF VVESTGVFTD KDKAAAHLKG
201: GAKKVVISAP SKDAPMFVVG VNEHEYKSDL DIVSNASCTT NCLAPLAKVI NDRFGIVEGL MTTVHSITAT QKTVDGPSMK DWRVVDLTVR LEKAATYDEI
301: KKAIKEESEG KLKGILGYTE DDVVSTDFVG DSRSSIFDAK AGIALSDNFV KLVSWYDNEW GYSTRVVDLI VHMSKA
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.