Factsheet for TraesCS6A01G213700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G391100.1	cytosol, cytosol, mitochondrion
TraesCS3A01G391500.1	cytosol, cytosol, mitochondrion
TraesCS3B01G422900.1	cytosol, cytosol, mitochondrion
TraesCS3B01G423200.1	cytosol, cytosol, mitochondrion
TraesCS3D01G383700.1	cytosol, cytosol, mitochondrion
TraesCS3D01G384000.1	cytosol, cytosol, mitochondrion
TraesCS3D01G384100.2	cytosol, cytosol, mitochondrion
TraesCS5A01G009400.1	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	TraesCS3A01G391100.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3A01G391500.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3B01G422900.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3B01G423200.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3D01G383700.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3D01G384000.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3D01G384100.2	AT2G36460.1	23316205
AT1G13440.1	TraesCS5A01G009400.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3A01G391100.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3A01G391500.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3B01G422900.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3B01G423200.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3D01G383700.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3D01G384000.1	AT2G36460.1	23316205
AT1G13440.1	TraesCS3D01G384100.2	AT2G36460.1	23316205
AT1G13440.1	TraesCS5A01G009400.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3A01G391100.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3A01G391500.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3B01G422900.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3B01G423200.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3D01G383700.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3D01G384000.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3D01G384100.2	AT2G36460.1	23316205
AT3G04120.1	TraesCS5A01G009400.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3A01G391100.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3A01G391500.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3B01G422900.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3B01G423200.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3D01G383700.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3D01G384000.1	AT2G36460.1	23316205
AT3G04120.1	TraesCS3D01G384100.2	AT2G36460.1	23316205
AT3G04120.1	TraesCS5A01G009400.1	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G196300.2	Wheat	golgi, nucleus	99.41	99.41
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	99.41	93.58
Os02t0601300-01	Rice	plasma membrane	92.58	92.58
Zm00001d051001_P002	Maize	cytosol	91.39	91.39
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	98.52	91.21
EES05377	Sorghum	cytosol	91.1	91.1
KXG21112	Sorghum	cytosol	89.32	89.32
VIT_01s0010g02460.t01	Wine grape	cytosol	89.02	88.24
Solyc03g111010.2.1	Tomato	plastid	87.24	87.24
PGSC0003DMT400039449	Potato	extracellular	87.24	87.24
KRG97466	Soybean	endoplasmic reticulum, nucleus	87.83	87.06
KRH31426	Soybean	endoplasmic reticulum	87.54	86.76
Solyc06g071920.2.1	Tomato	nucleus	86.65	86.65
CDY49358	Canola	cytosol, mitochondrion	86.35	86.61
Bra040213.1-P	Field mustard	cytosol	86.65	86.39
GSMUA_Achr11P...	Banana	cytosol	88.43	86.38
Bra016729.1-P	Field mustard	cytosol	86.65	86.14
AT3G04120.1	Thale cress	cytosol	86.35	86.09
Bra040146.1-P	Field mustard	cytosol	86.35	86.09
VIT_17s0000g10430.t01	Wine grape	extracellular	86.05	86.05
PGSC0003DMT400069357	Potato	cytosol	86.05	86.05
Bra026904.1-P	Field mustard	cytosol	86.05	85.8
AT1G13440.1	Thale cress	cytosol	86.05	85.8
PGSC0003DMT400044944	Potato	extracellular	85.46	85.21
Bra019722.1-P	Field mustard	cytosol	74.18	85.03
Solyc05g014470.2.1	Tomato	extracellular, plastid	85.16	84.91
KRH54234	Soybean	endoplasmic reticulum, nucleus	84.27	84.02
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	86.65	83.91
KRH63724	Soybean	nucleus	83.98	83.73
KRH63725	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	89.02	83.57
KRH54227	Soybean	endoplasmic reticulum, nucleus	83.68	83.43
CDY42906	Canola	cytosol	86.94	83.0
CDX74199	Canola	endoplasmic reticulum	86.05	82.39
TraesCS7A01G313100.1	Wheat	cytosol	82.79	80.87
CDX98100	Canola	cytosol, mitochondrion, peroxisome	74.18	78.62
CDY50169	Canola	cytosol	86.65	78.49
CDY21098	Canola	cytosol	86.65	78.28
GSMUA_Achr11P...	Banana	plasma membrane	89.32	74.88
CDY26651	Canola	mitochondrion, peroxisome	73.89	74.77
CDY30032	Canola	cytosol	86.65	74.3
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	74.48	73.61
PGSC0003DMT400044945	Potato	cytosol	37.98	72.32
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	85.76	67.21
CDY29987	Canola	cytosol, peroxisome, plastid	74.18	66.49
Zm00001d017121_P001	Maize	plastid	91.1	60.2
TraesCS7A01G478100.2	Wheat	plastid	70.62	58.05
TraesCS6A01G157500.1	Wheat	plastid	69.73	56.49
KRH37937	Soybean	plastid	13.06	50.0
TraesCS2A01G344600.1	Wheat	golgi, plastid	46.88	39.4
TraesCS5A01G495100.1	Wheat	golgi, plastid	48.37	36.71

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836
PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	EnsemblPlantsGene:TraesCS6A01G213700
EnsemblPlants:TraesCS6A01G213700.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:389164324..389166728

Molecular Weight (calculated)

36595.8 Da

IEP (calculated)

7.575

GRAVY (calculated)

-0.122

Length

337 amino acids

Sequence
(BLAST)

001: MAPIKIGING FGRIGRLVAR VALQSPDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHHE VKVKDSKTLL FGQKEVAVFG CRNPEEIPWA AAGAEYVVES
101: TGVFTDKDKA AAHIKGGAKK VIISAPSKDA PMFVCGVNEK EYKSDIDIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HAMTATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPELNGKL TGMAFRVPTV DVSVVDLTVR LAKPATYDQI KAAIKEESEG NLKGILGYVD EDLVSTDFQG DNRSSIFDAK
301: AGIALNDNFV KLVSWYDNEW GYSTRVVDLI RHMHSSK

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.