Factsheet for GSMUA_Achr11P11040_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	81.09	94.49
Os04t0486600-01	Rice	plastid	77.61	92.58
TraesCS6D01G196300.2	Wheat	golgi, nucleus	75.12	89.61
Os02t0601300-01	Rice	plasma membrane	74.88	89.32
TraesCS6A01G213700.1	Wheat	unclear	74.88	89.32
Zm00001d051001_P002	Maize	cytosol	74.63	89.02
EES05377	Sorghum	cytosol	74.38	88.72
KXG21112	Sorghum	cytosol	73.88	88.13
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	78.61	88.02
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	76.62	86.03
GSMUA_Achr9P02180_001	Banana	endoplasmic reticulum	76.62	84.15
TraesCS7B01G234400.1	Wheat	cytosol	71.39	83.67
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	74.38	82.14
GSMUA_Achr5P25410_001	Banana	unclear	79.35	80.96
GSMUA_Achr5P00240_001	Banana	cytosol	40.3	77.51
GSMUA_Achr11P...	Banana	mitochondrion	71.39	68.66
GSMUA_Achr2P02610_001	Banana	cytosol	12.69	66.23
GSMUA_Achr2P02600_001	Banana	cytosol	8.96	62.07
Zm00001d017121_P001	Maize	plastid	78.11	61.57
GSMUA_Achr8P33500_001	Banana	plastid	61.19	57.34
GSMUA_Achr7P03580_001	Banana	plastid	60.45	56.64
GSMUA_Achr5P17220_001	Banana	extracellular	13.43	49.09
GSMUA_Achr11P...	Banana	mitochondrion	39.55	40.46
GSMUA_Achr10P...	Banana	plastid	29.6	37.9
GSMUA_Achr6P16250_001	Banana	plastid	39.3	36.07
GSMUA_Achr11P...	Banana	plastid	39.05	34.73
GSMUA_Achr5P00230_001	Banana	plastid	18.41	33.64
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	8.71	26.32

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr11G11040_001	EnsemblPlants:GSMUA_Achr11P11040_001	EnsemblPlants:GSMUA_Achr11T11040_001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M0RR84	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000294B443	SEG:seg	:

Description

Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G11040_001]

Coordinates

chr11:-:8758767..8763423

Molecular Weight (calculated)

44058.0 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.072

Length

402 amino acids

Sequence
(BLAST)

001: MYFNSSIITF EKIYKRKFQK PCATLNGFAC HFAYIILRRL TRLSSSHSSL SSLLLASGIS SYIAMAGKIK IGINGFGRIG RLVARVALQS DDVELVAVND
101: PFITTDYMTY MFKYDTVHGS WKHHDIKVKD SKTLLFGEKQ VTVFGIRNPE EIPWGEAGAE YIVESTGVFT DKDKAAAHLK GGAKKVIISA PSKDAPMFVV
201: GVNENEYKPD INIVSNASCT TNCLAPLAKV IHDRFGIVEG LMTTVHAITA TQKTVDGPSS KDWRGGRAAS FNIIPSSTGA AKAVGKVLPA LNGKLTGMAF
301: RVPTVDVSVV DLTVRLEKEA TYDEIKAAIK EESEGKLKGI LGYVEEDLVS TDFVGDNRSS IFDAKAGIAL NKKFAKLVSW YDNEWGYSSR VVDLIRHIHK
401: NQ

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.