Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G391100.1 | cytosol, cytosol, mitochondrion |
| TraesCS3A01G391500.1 | cytosol, cytosol, mitochondrion |
| TraesCS3B01G422900.1 | cytosol, cytosol, mitochondrion |
| TraesCS3B01G423200.1 | cytosol, cytosol, mitochondrion |
| TraesCS3D01G383700.1 | cytosol, cytosol, mitochondrion |
| TraesCS3D01G384000.1 | cytosol, cytosol, mitochondrion |
| TraesCS3D01G384100.2 | cytosol, cytosol, mitochondrion |
| TraesCS5A01G009400.1 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 94.13 | 100.0 |
| TraesCS6A01G213700.1 | Wheat | unclear | 93.58 | 99.41 |
| Os02t0601300-01 | Rice | plasma membrane | 87.43 | 92.88 |
| Zm00001d051001_P002 | Maize | cytosol | 86.59 | 91.99 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 93.3 | 91.76 |
| EES05377 | Sorghum | cytosol | 86.31 | 91.69 |
| TraesCS7B01G234400.1 | Wheat | cytosol | 86.87 | 90.67 |
| KXG21112 | Sorghum | cytosol | 84.64 | 89.91 |
| VIT_01s0010g02460.t01 | Wine grape | cytosol | 84.08 | 88.53 |
| Solyc03g111010.2.1 | Tomato | plastid | 82.4 | 87.54 |
| PGSC0003DMT400039449 | Potato | extracellular | 82.4 | 87.54 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 82.96 | 87.35 |
| KRH31426 | Soybean | endoplasmic reticulum | 82.68 | 87.06 |
| GSMUA_Achr11P... | Banana | cytosol | 83.8 | 86.96 |
| Solyc06g071920.2.1 | Tomato | nucleus | 81.84 | 86.94 |
| CDY49358 | Canola | cytosol, mitochondrion | 81.56 | 86.9 |
| Bra040213.1-P | Field mustard | cytosol | 81.84 | 86.69 |
| Bra016729.1-P | Field mustard | cytosol | 81.84 | 86.43 |
| AT3G04120.1 | Thale cress | cytosol | 81.56 | 86.39 |
| Bra040146.1-P | Field mustard | cytosol | 81.56 | 86.39 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 81.28 | 86.35 |
| PGSC0003DMT400069357 | Potato | cytosol | 81.28 | 86.35 |
| AT1G13440.1 | Thale cress | cytosol | 81.28 | 86.09 |
| Bra026904.1-P | Field mustard | cytosol | 81.28 | 86.09 |
| TraesCS7B01G213300.1 | Wheat | golgi | 81.01 | 86.05 |
| PGSC0003DMT400044944 | Potato | extracellular | 80.73 | 85.5 |
| Bra019722.1-P | Field mustard | cytosol | 70.11 | 85.37 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 80.45 | 85.21 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 85.2 | 84.96 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 81.84 | 84.2 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 79.33 | 84.02 |
| KRH63724 | Soybean | nucleus | 79.05 | 83.73 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 79.05 | 83.73 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 78.77 | 83.43 |
| CDY42906 | Canola | cytosol | 82.12 | 83.29 |
| CDX74199 | Canola | endoplasmic reticulum | 81.28 | 82.67 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 71.23 | 80.19 |
| CDY50169 | Canola | cytosol | 82.4 | 79.3 |
| CDY21098 | Canola | cytosol | 82.4 | 79.09 |
| GSMUA_Achr11P... | Banana | plasma membrane | 86.03 | 76.62 |
| CDY26651 | Canola | mitochondrion, peroxisome | 70.95 | 76.28 |
| CDY30032 | Canola | cytosol | 83.24 | 75.83 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 71.23 | 74.78 |
| PGSC0003DMT400044945 | Potato | cytosol | 36.03 | 72.88 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 81.28 | 67.67 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 70.95 | 67.55 |
| Zm00001d017121_P001 | Maize | plastid | 88.83 | 62.35 |
| TraesCS7B01G380500.1 | Wheat | plastid | 66.48 | 58.19 |
| TraesCS6B01G185400.1 | Wheat | plastid | 65.36 | 56.25 |
| KRH37937 | Soybean | plastid | 12.29 | 50.0 |
| TraesCS2B01G342200.1 | Wheat | plastid | 44.13 | 39.4 |
| TraesCS4B01G323000.1 | Wheat | plastid | 45.81 | 36.94 |
| TraesCS3B01G076300.1 | Wheat | plastid | 35.47 | 21.49 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | InterPro:GlycerAld/Erythrose_P_DH |
| InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 |
| PFAM:PF02800 | PIRSF:PIRSF000149 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF63 |
| SMART:SM00846 | SUPFAM:SSF51735 | SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | EnsemblPlantsGene:TraesCS6B01G243700 | EnsemblPlants:TraesCS6B01G243700.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:433678877..433681474
Molecular Weight (calculated)
39001.0 Da
IEP (calculated)
8.125
GRAVY (calculated)
-0.066
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPRSLPVKF CINHPVCLVL LMAPIKIGIN GFGRIGRLVA RVALQSPDVE LVAVNDPFIT TDYMTYMFKY DTVHGQWKHH EVKVKDSKTL LFGEKEVAVF
101: GCRNPEEIPW AAAGAEYVVE STGVFTDKDK AAAHIKGGAK KVIISAPSKD APMFVCGVNE KEYKSDIDIV SNASCTTNCL APLAKVINDR FGIVEGLMTT
201: VHAMTATQKT VDGPSSKDWR GGRAASFNII PSSTGAAKAV GKVLPELNGK LTGMAFRVPT VDVSVVDLTV RLAKPATYDQ IKAAIKEESE GNLKGILGYV
301: DEDLVSTDFQ GDNRSSIFDA KAGIALNDNF VKLVSWYDNE WGYSTRVVDL IRHMHSTK
101: GCRNPEEIPW AAAGAEYVVE STGVFTDKDK AAAHIKGGAK KVIISAPSKD APMFVCGVNE KEYKSDIDIV SNASCTTNCL APLAKVINDR FGIVEGLMTT
201: VHAMTATQKT VDGPSSKDWR GGRAASFNII PSSTGAAKAV GKVLPELNGK LTGMAFRVPT VDVSVVDLTV RLAKPATYDQ IKAAIKEESE GNLKGILGYV
301: DEDLVSTDFQ GDNRSSIFDA KAGIALNDNF VKLVSWYDNE WGYSTRVVDL IRHMHSTK
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.