CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY43716	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019722.1-P	Field mustard	cytosol	74.55	99.66
CDY49358	Canola	cytosol, mitochondrion	83.21	97.32
AT3G04120.1	Thale cress	cytosol	83.21	96.75
AT1G13440.1	Thale cress	cytosol	83.21	96.75
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	84.22	95.11
CDX98100	Canola	cytosol, mitochondrion, peroxisome	76.59	94.65
CDY50169	Canola	cytosol	88.55	93.55
CDX74199	Canola	endoplasmic reticulum	83.72	93.47
CDY21098	Canola	cytosol	88.55	93.3
CDY42906	Canola	cytosol	83.72	93.2
Solyc05g014470.2.1	Tomato	extracellular, plastid	78.37	91.12
PGSC0003DMT400044944	Potato	extracellular	78.37	91.12
KRG97466	Soybean	endoplasmic reticulum, nucleus	78.12	90.29
CDY26651	Canola	mitochondrion, peroxisome	76.08	89.79
VIT_17s0000g10430.t01	Wine grape	extracellular	76.84	89.61
KRH31426	Soybean	endoplasmic reticulum	77.35	89.41
Os04t0486600-01	Rice	plastid	76.59	89.32
Os02t0601300-01	Rice	plasma membrane	75.57	88.13
KRH63724	Soybean	nucleus	75.57	87.87
KRH54234	Soybean	endoplasmic reticulum, nucleus	75.57	87.87
TraesCS7D01G309500.1	Wheat	cytosol	75.32	87.83
TraesCS7B01G213300.1	Wheat	golgi	75.32	87.83
KRH63725	Soybean	endoplasmic reticulum, nucleus	75.32	87.57
EES05377	Sorghum	cytosol	75.06	87.54
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	75.83	87.39
KRH54227	Soybean	endoplasmic reticulum, nucleus	75.06	87.28
Zm00001d051001_P002	Maize	cytosol	74.81	87.24
KXG24320	Sorghum	cytosol	74.55	86.94
TraesCS6D01G196300.2	Wheat	golgi, nucleus	74.55	86.94
TraesCS6A01G213700.1	Wheat	unclear	74.3	86.65
KXG21112	Sorghum	cytosol	74.3	86.65
KXG20851	Sorghum	cytosol	74.05	86.35
Zm00001d049641_P001	Maize	plasma membrane, plastid	73.79	86.05
Os08t0126300-01	Rice	cytosol	73.28	85.46
OQU77090	Sorghum	cytosol	47.33	83.78
Zm00001d035156_P003	Maize	cytosol	74.05	83.38
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	75.83	83.24
TraesCS7A01G313100.1	Wheat	cytosol	72.77	82.9
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	87.79	80.23
TraesCS7B01G234400.1	Wheat	cytosol	69.97	80.17
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	74.05	79.95
CDY29987	Canola	cytosol, peroxisome, plastid	75.57	78.99
PGSC0003DMT400044945	Potato	cytosol	34.86	77.4
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	76.34	76.34
GSMUA_Achr2P02600_001	Banana	cytosol	9.41	63.79
GSMUA_Achr2P02610_001	Banana	cytosol	12.21	62.34
CDY25342	Canola	plastid	62.09	58.8
Zm00001d017121_P001	Maize	plastid	75.83	58.43
CDY22281	Canola	plastid	62.09	58.23
CDX67990	Canola	plastid	62.09	57.96
CDX79324	Canola	plastid	61.83	57.72
CDY33343	Canola	plastid	61.32	56.57
CDY35080	Canola	plastid	61.32	56.57
KRH37937	Soybean	plastid	10.94	48.86
CDY69523	Canola	cytosol	41.22	40.3
CDY19412	Canola	plastid	40.71	40.1
CDX98028	Canola	plastid	40.71	40.1
CDY16038	Canola	plastid	40.2	39.6
CDY28536	Canola	plastid	38.17	39.47
CDX83635	Canola	plastid	38.17	39.47
CDY26599	Canola	plastid	39.95	39.35
CDY13649	Canola	plastid	37.66	38.95
CDY48981	Canola	plastid	35.62	38.04
CDY35800	Canola	plastid	41.98	36.83

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078GXV7
UniProt:A0A078GXV7	EnsemblPlants:CDY30032	ProteinID:CDY30032	ProteinID:CDY30032.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00044567001
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836
PANTHER:PTHR10836:SF63	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniPathway:UPA00109	UniParc:UPI0004EE7BAB	SEG:seg

Description

BnaC05g09880DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078GXV7]

Coordinates

chrLK032248:+:17785..22322

Molecular Weight (calculated)

43221.1 Da

IEP (calculated)

7.634

GRAVY (calculated)

-0.052

Length

393 amino acids

Sequence
(BLAST)

001: MISLSFFPLR HCEKRLQIPR DTICFSSKPH QTLLTHFVVL SLDLIDTSLV INIEMADKKI KIGINGFGRI GRLVARVILQ RSDVELVAVN DPFITTEYMT
101: YMFKYDSVHG QWKHNELKVK DEKTLLFGEK PVTVFGIRNP EDIPWGEAGA DFVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEHEYKS
201: DLNIVSNASC TTNCLAPLAK VINDRFGIVE GLMTTVHSIT ATQKTVDGPS MKDWRGGRAA SFNIIPSSTG AAKAVGKVLP QLNGKLTGMS FRVPTVDVSV
301: VDLTVRLEKA ATYDEIKKAI KEESEGKLKG ILGYTEDDVV STDFVGDNRS SIFDAKAGIA LSDNFVKLVS WYDNEWGYST RVVDLIIHMS KAA

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.