CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67892
CDX76635
CDY11420
CDY22582
CDY25110
CDY59208

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	CDY22582	AT1G32060.1	17947231
AT3G26650.1	CDY59208	AT1G32060.1	17947231
AT3G26650.1	CDX67892	AT3G62410.1	17947231
AT3G26650.1	CDX76635	AT3G62410.1	17947231
AT3G26650.1	CDY11420	AT3G62410.1	17947231
AT3G26650.1	CDY25110	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032939.1-P	Field mustard	plastid	89.95	99.1
CDY13649	Canola	plastid	95.92	92.89
CDY28536	Canola	plastid	95.65	92.63
CDX83635	Canola	plastid	95.11	92.11
AT3G26650.1	Thale cress	plastid	91.58	85.1
CDY19412	Canola	plastid	90.49	83.46
CDX98028	Canola	plastid	90.49	83.46
CDY16038	Canola	plastid	89.95	82.96
CDY26599	Canola	plastid	89.95	82.96
VIT_14s0068g00680.t01	Wine grape	plastid	86.14	78.47
KRG94751	Soybean	extracellular, nucleus	85.6	78.16
KRH06774	Soybean	nucleus	85.33	77.92
PGSC0003DMT400030050	Potato	cytosol	83.97	77.44
Solyc04g009030.2.1	Tomato	plastid	82.88	76.44
Os04t0459500-02	Rice	plastid	83.42	76.37
TraesCS2B01G342200.1	Wheat	plastid	82.88	76.06
TraesCS2D01G322900.1	Wheat	plastid	82.88	76.06
Zm00001d003429_P001	Maize	plastid	83.15	75.93
TraesCS2A01G344600.1	Wheat	golgi, plastid	82.61	75.81
HORVU0Hr1G004830.6	Barley	plastid	82.61	74.51
Solyc02g020940.2.1	Tomato	plastid	82.07	73.84
GSMUA_Achr10P...	Banana	plastid	61.68	72.29
KXG26468	Sorghum	plastid	82.07	72.25
Zm00001d025607_P001	Maize	cytosol, plastid	72.01	71.24
Zm00001d025599_P001	Maize	plastid	77.99	71.22
Zm00001d025593_P001	Maize	plastid	77.45	70.72
GSMUA_Achr6P16250_001	Banana	plastid	83.15	69.86
KRH70104	Soybean	plastid	49.46	65.94
CDY69523	Canola	cytosol	68.75	62.94
CDY35800	Canola	plastid	71.74	58.93
CDY49358	Canola	cytosol, mitochondrion	37.5	41.07
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	37.5	39.66
CDY42906	Canola	cytosol	37.77	39.38
CDX74199	Canola	endoplasmic reticulum	37.5	39.2
CDY25342	Canola	plastid	44.02	39.04
CDY22281	Canola	plastid	44.29	38.9
CDY50169	Canola	cytosol	38.04	37.63
CDY21098	Canola	cytosol	38.04	37.53
CDX79324	Canola	plastid	42.93	37.53
CDX67990	Canola	plastid	42.93	37.53
CDY35080	Canola	plastid	42.93	37.09
CDY33343	Canola	plastid	42.66	36.85
CDY30032	Canola	cytosol	38.04	35.62
CDX98100	Canola	cytosol, mitochondrion, peroxisome	30.71	35.53
CDY26651	Canola	mitochondrion, peroxisome	30.43	33.63
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	30.71	33.14
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	37.5	32.09
CDY29987	Canola	cytosol, peroxisome, plastid	30.43	29.79

Protein Annotations

MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078IG54	UniProt:A0A078IG54	EnsemblPlants:CDY48981
ProteinID:CDY48981	ProteinID:CDY48981.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00092181001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
UniParc:UPI0004EEC835	SEG:seg	:	:	:	:

Description

BnaA02g28150DBnaA02g28150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG54]

Coordinates

chrLK032805:-:46278..47990

Molecular Weight (calculated)

39654.5 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.038

Length

368 amino acids

Sequence
(BLAST)

001: MASATFSVPK PSLQGFTEFS GLRSSSASLP FGNKKLSSDE FVSAVTFQTS AVSSLKGVTE AKLKVAINGF GRIGRNFLRC WHGRKDSPFD VIAINDTGGV
101: KQASHLLKYD STLGIFDADV KPSGDAALSV DGKIIKIVSN RNPSLLPWKE LGIDILQAKD IPTYVVGVNA DAYNPDKPII SNASCTTNCL APFVKVLDQK
201: FGIIKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVA LVLPNLKGKH NGIALRVPTP NVSVVDLVVQ VTKKTFAEEV NAAFRNSAEK
301: ELKGILKVCD EPLVSVDFKC SDVSSTIDSS LTMVMGDDMV KVIAWYDNEW GYSQRVVDLA DIVANNWK

Best Arabidopsis Sequence Match ( AT1G12900.1 )
(BLAST)

001: MASATFSVAK PSLQGFSEFS GLRNSSALPF AKRSSSDEFV SFVSFQTSAM RSNGGYRKGV TEAKIKVAIN GFGRIGRNFL RCWHGRKDSP LDVVVINDTG
101: GVKQASHLLK YDSTLGIFDA DVKPSGDSAL SVDGKIIKIV SDRNPSNLPW GELGIDLVIE GTGVFVDRDG AGKHLQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYSHEDTI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPNLKGK LNGIALRVPT
301: PNVSVVDLVV QVSKKTFAEE VNAAFRDAAE KELKGILDVC DEPLVSVDFR CSDVSSTIDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANNWK

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.