Factsheet for Solyc02g020940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079470.2.1
Solyc06g009630.1.1
Solyc08g076220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Solyc08g076220.2.1	AT1G32060.1	17947231
AT3G26650.1	Solyc01g079470.2.1	AT3G62410.1	17947231
AT3G26650.1	Solyc06g009630.1.1	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009030.2.1	Tomato	plastid	88.26	90.48
CDY16038	Canola	plastid	83.13	85.21
CDY26599	Canola	plastid	82.89	84.96
Bra026948.1-P	Field mustard	plastid	82.64	84.71
CDX98028	Canola	plastid	82.64	84.71
CDY19412	Canola	plastid	82.64	84.71
Bra019797.1-P	Field mustard	plastid	82.4	84.46
VIT_14s0068g00680.t01	Wine grape	plastid	82.89	83.91
AT3G26650.1	Thale cress	plastid	80.93	83.59
Bra025219.1-P	Field mustard	plastid	77.02	82.89
CDX83635	Canola	plastid	76.77	82.63
CDY28536	Canola	plastid	76.77	82.63
CDY13649	Canola	plastid	76.53	82.37
Os04t0459500-02	Rice	plastid	80.93	82.34
Bra032939.1-P	Field mustard	plastid	67.24	82.34
CDY48981	Canola	plastid	73.84	82.07
Zm00001d003429_P001	Maize	plastid	80.44	81.64
TraesCS2D01G322900.1	Wheat	plastid	79.46	81.05
TraesCS2B01G342200.1	Wheat	plastid	79.46	81.05
TraesCS2A01G344600.1	Wheat	golgi, plastid	79.22	80.8
HORVU0Hr1G004830.6	Barley	plastid	79.46	79.66
GSMUA_Achr10P...	Banana	plastid	60.88	79.3
Zm00001d025607_P001	Maize	cytosol, plastid	71.39	78.49
KXG26468	Sorghum	plastid	79.46	77.75
Zm00001d025599_P001	Maize	plastid	75.55	76.67
Zm00001d025593_P001	Maize	plastid	74.82	75.93
AT1G12900.5	Thale cress	endoplasmic reticulum	81.42	75.51
GSMUA_Achr6P16250_001	Banana	plastid	80.68	75.34
KRH70104	Soybean	plastid	50.12	74.28
Solyc12g094640.1.1	Tomato	plastid	70.9	64.44
Solyc04g082630.2.1	Tomato	plastid	71.64	61.55
Solyc05g014480.2.1	Tomato	cytosol	4.65	50.0
Solyc03g111010.2.1	Tomato	plastid	39.12	47.48
Solyc06g071920.2.1	Tomato	nucleus	38.39	46.59
Solyc05g014470.2.1	Tomato	extracellular, plastid	38.39	46.45
Solyc05g005820.2.1	Tomato	plastid, unclear	37.41	45.4
Solyc10g005510.2.1	Tomato	plastid	42.79	41.77
Solyc01g098950.1.1	Tomato	cytosol	27.63	40.65
Solyc03g111000.2.1	Tomato	cytosol	13.94	32.76

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4B4U4
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc02g020940.2	EnsemblPlants:Solyc02g020940.2.1
TIGRFAMs:TIGR01534	UniParc:UPI0002768630	SEG:seg	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4B4U4]

Coordinates

chr2:+:20374738..20376520

Molecular Weight (calculated)

43518.0 Da

IEP (calculated)

8.203

GRAVY (calculated)

0.047

Length

409 amino acids

Sequence
(BLAST)

001: MASAALSVAN SSVHVSKNKG SFSEFTGLRT SSAVPFGVGW KTNVDLLSLV AYQTSVISGA GKNNNNNSRV VEAKLKVAIN GFGRIGRNFL RCWHGRKDSP
101: LDVIAINDSG GVKQASHLLK YDSTLGIFDA DVKPVGTDGI SVDGKIIKVV SDRNPINLPW KDLGVDLVIE GTGVFVDREG AGKHIQAGAK KVLITAPGKG
201: DIPTYVVGVN ADLYSPDESI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPSLKGK
301: LNGIALRVPT PNVSVVDLVV QVSKKTFAEE VNAAFRESAD NELAGILSVC DEPLVSVDFR CSDVSSTVDA SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL
401: ANIVANQWI

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.