Factsheet for VIT_14s0068g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02480.t01
VIT_02s0109g00080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	VIT_02s0109g00080.t01	AT1G32060.1	17947231
AT3G26650.1	VIT_01s0026g02480.t01	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06774	Soybean	nucleus	90.1	90.32
KRG94751	Soybean	extracellular, nucleus	89.6	89.83
Bra019797.1-P	Field mustard	plastid	87.87	88.97
CDX98028	Canola	plastid	87.87	88.97
CDY19412	Canola	plastid	87.87	88.97
Bra026948.1-P	Field mustard	plastid	87.13	88.22
CDY16038	Canola	plastid	87.13	88.22
CDY26599	Canola	plastid	87.13	88.22
CDY13649	Canola	plastid	82.43	87.63
CDY28536	Canola	plastid	82.18	87.37
AT3G26650.1	Thale cress	plastid	85.4	87.12
Bra025219.1-P	Field mustard	plastid	81.93	87.11
CDX83635	Canola	plastid	81.68	86.84
Solyc04g009030.2.1	Tomato	plastid	85.15	86.22
CDY48981	Canola	plastid	78.47	86.14
PGSC0003DMT400030050	Potato	cytosol	84.65	85.71
Bra032939.1-P	Field mustard	plastid	70.79	85.63
Os04t0459500-02	Rice	plastid	83.66	84.08
GSMUA_Achr10P...	Banana	plastid	65.35	84.08
Zm00001d003429_P001	Maize	plastid	83.17	83.37
TraesCS2D01G322900.1	Wheat	plastid	82.43	83.04
TraesCS2B01G342200.1	Wheat	plastid	82.43	83.04
Solyc02g020940.2.1	Tomato	plastid	83.91	82.89
TraesCS2A01G344600.1	Wheat	golgi, plastid	82.18	82.79
HORVU0Hr1G004830.6	Barley	plastid	82.18	81.37
AT1G12900.5	Thale cress	endoplasmic reticulum	87.62	80.27
KXG26468	Sorghum	plastid	82.43	79.67
Zm00001d025607_P001	Maize	cytosol, plastid	72.52	78.76
KRH70104	Soybean	plastid	53.71	78.62
GSMUA_Achr6P16250_001	Banana	plastid	84.65	78.08
Zm00001d025599_P001	Maize	plastid	77.48	77.67
Zm00001d025593_P001	Maize	plastid	76.73	76.92
VIT_18s0122g00960.t01	Wine grape	plastid	74.26	66.23
VIT_17s0000g10430.t01	Wine grape	extracellular	38.37	45.99
VIT_01s0010g02460.t01	Wine grape	cytosol	38.37	45.59
VIT_14s0171g00440.t01	Wine grape	cytosol	37.62	45.1
VIT_14s0006g03030.t01	Wine grape	extracellular	9.65	43.33
VIT_19s0085g00600.t01	Wine grape	plastid	43.07	40.56
VIT_18s0089g00560.t01	Wine grape	mitochondrion, peroxisome, plastid	11.63	24.48
VIT_18s0089g00590.t01	Wine grape	plastid	18.07	18.58

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	EntrezGene:100246378	wikigene:100246378	Gene3D:3.30.360.10
Gene3D:3.40.50.720	EMBL:AM454813	ProteinID:CAN78872	ProteinID:CAN78872.1	ProteinID:CCB46952	ProteinID:CCB46952.1
UniProt:F6H409	EMBL:FN595232	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	EntrezGene:LOC100246378	wikigene:LOC100246378	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGR:TC51781	TIGR:TC63227	TIGRFAMs:TIGR01534	UniParc:UPI00019849E6
ArrayExpress:VIT_14s0068g00680	EnsemblPlantsGene:VIT_14s0068g00680	EnsemblPlants:VIT_14s0068g00680.t01	unigene:Vvi.6670	RefSeq:XP_002278352	RefSeq:XP_002278352.1
SEG:seg	:	:	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6H409]

Coordinates

chr14:+:24482406..24484689

Molecular Weight (calculated)

43157.5 Da

IEP (calculated)

7.464

GRAVY (calculated)

-0.031

Length

404 amino acids

Sequence
(BLAST)

001: MASATLSVAK PSLQANGKGF AEFSGLRNSS ACLSFNRKTS DDFLSVVAFQ TSAVGSNSGG YRKGVTEAKL KVAINGFGRI GRNFLRCWHG RKDSPLDVIV
101: VNDTGGVKQA SHLLKYDSIL GTFEADVKAV GDDAISVDGK VIKIVSSRNP LDLPWGDLDI DLVIEGTGVF VDRDGAGKHI QAGAKKVLIT APGKGDIPTY
201: VVGVNADEYN HDESIISNAS CTTNCLAPFV KVLDQKFGII KGTMTTTHSY TGDQRLLDAS HRDLRRARAA ALNIVPTSTG AAKAVALVLP TLKGKLNGIA
301: LRVPTPNVSV VDLVVQVSKK TFAEEVNAGF RDSAEKELQG ILSVCDEPLV SVDFRCSDVS STVDSSLTMV MGDDMVKVIA WYDNEWGYSQ RVVDLADIVA
401: NKWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.