Factsheet for VIT_02s0109g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076220.2.1	Tomato	plastid	86.03	87.75
PGSC0003DMT400024090	Potato	cytosol, extracellular, plastid	87.01	87.65
KRH39632	Soybean	nucleus, plastid	87.01	87.22
KRH74288	Soybean	nucleus, plastid	86.76	86.98
Bra033861.1-P	Field mustard	plastid	82.35	85.06
CDY22582	Canola	plastid	82.6	84.89
Bra023235.1-P	Field mustard	plastid	82.35	84.63
CDY59208	Canola	plastid	82.35	84.63
CDY41745	Canola	plastid	82.84	84.29
AT1G32060.1	Thale cress	plastid	81.13	83.8
CDX84108	Canola	plastid	81.86	83.29
EES12777	Sorghum	plastid	73.77	77.78
CDY35538	Canola	plastid	59.07	75.55
Os04t0596900-00	Rice	extracellular, plasma membrane	73.53	74.63
GSMUA_Achr1P23890_001	Banana	plastid	71.08	71.25
Zm00001d002454_P002	Maize	plastid	68.87	67.39
GSMUA_Achr2P09720_001	Banana	cytosol	16.67	67.33
VIT_16s0039g02140.t01	Wine grape	plastid	66.91	66.91
VIT_17s0000g01620.t01	Wine grape	cytosol	18.87	16.31
VIT_14s0171g00090.t01	Wine grape	cytosol	17.89	15.15
VIT_19s0015g01730.t01	Wine grape	cytosol	17.4	14.82
VIT_08s0007g01100.t01	Wine grape	cytosol	7.6	13.66
VIT_17s0000g01600.t01	Wine grape	cytosol	6.37	11.45
CDY07734	Canola	plastid	1.47	7.69
VIT_14s0066g00270.t01	Wine grape	endoplasmic reticulum, golgi	17.65	7.0

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	EntrezGene:100244092	wikigene:100244092	Gene3D:3.40.50.300	EMBL:AM456133
ProteinID:CAN78901	ProteinID:CAN78901.1	ProteinID:CCB48249	ProteinID:CCB48249.1	UniProt:F6H7Q2	EMBL:FN595250
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004849	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975
GO:GO:0006139	GO:GO:0006206	GO:GO:0006222	GO:GO:0008150	GO:GO:0008152	GO:GO:0008974
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0043097	EntrezGene:LOC100244092	wikigene:LOC100244092	InterPro:P-loop_NTPase	PFAM:PF00485
PRINTS:PR00478	InterPro:PRK	InterPro:PRK/URK	ScanProsite:PS00567	PANTHER:PTHR10285	PANTHER:PTHR10285:SF120
SUPFAM:SSF52540	TIGR:TC56646	TIGR:TC61043	UniParc:UPI000198638E	ArrayExpress:VIT_02s0109g00080	EnsemblPlantsGene:VIT_02s0109g00080
EnsemblPlants:VIT_02s0109g00080.t01	unigene:Vvi.6790	RefSeq:XP_002263724	RefSeq:XP_002263724.1	SEG:seg	:

Description

Phosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:F6H7Q2]

Coordinates

chr2:+:12236164..12239904

Molecular Weight (calculated)

45226.9 Da

IEP (calculated)

6.118

GRAVY (calculated)

-0.256

Length

408 amino acids

Sequence
(BLAST)

001: MAICTVYTTQ SLNSTCSVSK PAKPQLGFHQ KQVVFFTKSR RRSGMSSCGS SVITCSAGEQ RTVVIGLAAD SGCGKSTFMR RLTSVFGGAA EPPRGGNPDS
101: NTLISDTTTV ICLDDYHSLD RTGRKEKGVT ALDPRANDFD LMYEQVKAIK DGIAVEKPIY NHVTGLLDPP ETIKPPKILV IEGLHPMYDA RVRDLLDFSI
201: YLDISNEVKF AWKIQRDMAE RGHSLESIKA SIEARKPDFD AYIDPQKQYA DAVIEVLPTQ LIPDDNEGKV LRVRLIMKEG VTYFSPVYLF DEGSTISWIP
301: CGRKLTCSYP GINFSYGPDT YYGHEVSVLE MDGQFDRLDE LIYVESHLSN ISTKFYGEIT QQLLKHSDFP GSNNGTGLFQ TIVGLKIRDL FEQIVASRAA
401: TPLEATKA

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.