CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32060.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002454_P002	Maize	plastid	86.3	80.1
Solyc08g076220.2.1	Tomato	plastid	76.74	74.25
VIT_02s0109g00080.t01	Wine grape	plastid	77.78	73.77
PGSC0003DMT400024090	Potato	cytosol, extracellular, plastid	76.74	73.33
Bra033861.1-P	Field mustard	plastid	74.42	72.91
Bra023235.1-P	Field mustard	plastid	74.42	72.54
Os04t0596900-00	Rice	extracellular, plasma membrane	75.19	72.39
AT1G32060.1	Thale cress	plastid	73.64	72.15
KRH39632	Soybean	nucleus, plastid	75.71	71.99
KRH74288	Soybean	nucleus, plastid	75.19	71.5
KXG30947	Sorghum	plastid	77.0	71.46
GSMUA_Achr1P23890_001	Banana	plastid	70.8	67.32
CDY35538	Canola	plastid	53.23	64.58
GSMUA_Achr2P09720_001	Banana	cytosol	16.8	64.36
EES15317	Sorghum	plastid	18.86	15.34
KXG24145	Sorghum	cytosol	18.6	15.25
EER99151	Sorghum	cytosol	18.6	14.69
KXG29238	Sorghum	mitochondrion	19.38	12.56
EES19635	Sorghum	plastid	7.24	9.66
KXG25691	Sorghum	cytosol	5.68	8.91

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	Gene3D:3.40.50.300	EntrezGene:8071104	UniProt:C5YF36	EnsemblPlants:EES12777
ProteinID:EES12777	ProteinID:EES12777.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004849
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0006206	GO:GO:0006222	GO:GO:0008150
GO:GO:0008152	GO:GO:0008974	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0043097	InterPro:P-loop_NTPase	PFAM:PF00485
PRINTS:PR00478	InterPro:PRK	InterPro:PRK/URK	ScanProsite:PS00567	PANTHER:PTHR10285	PANTHER:PTHR10285:SF120
MetaCyc:PWY-5723	EnsemblPlantsGene:SORBI_3006G200800	SUPFAM:SSF52540	UniParc:UPI0001A87456	RefSeq:XP_002448449.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:55218477..55222839

Molecular Weight (calculated)

42660.9 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.218

Length

387 amino acids

Sequence
(BLAST)

001: MAAFTMHTSA ATSPYSPAGT AILLRSRSRS YSYPTAATTT IRVSCSKTTV VIGVAADSGC GKSTFTRRLT SVLGGGAEPP RGGNPNSNTL VSDTATVICL
101: DDYHSLDRAG RKAKGVTALD PRAIDFDLMY QQVRAIKDGR AVEKPVYNHV TGRIDPPELI TPPEILVIKG LHPMYDERVR DLLDLSIYLD ISNEVKFAWK
201: VQRDMAERGH SLESIRASIE ARKPDFDAYI EPQKQYADAV IEVLPTQLIP GPGDDEGKVL RVKLIMKEGV EHFAPVYLFD EGSTVNWIPC GRKLSCSYPG
301: IRFAYGFGTY FGHEVSVVEM DGQFDKLDEL IYVETHLSNL STKFYGEVAQ QMLTHADLPG SNNGTGLFQT IVGLKIRDLY EQIVARR

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.