CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74288	Soybean	nucleus, plastid	98.77	98.77
Bra033861.1-P	Field mustard	plastid	85.01	87.59
PGSC0003DMT400024090	Potato	cytosol, extracellular, plastid	86.98	87.41
Solyc08g076220.2.1	Tomato	plastid	85.75	87.25
VIT_02s0109g00080.t01	Wine grape	plastid	87.22	87.01
CDY59208	Canola	plastid	84.77	86.9
CDY22582	Canola	plastid	84.77	86.9
Bra023235.1-P	Field mustard	plastid	84.77	86.9
CDY41745	Canola	plastid	84.28	85.54
AT1G32060.1	Thale cress	plastid	82.06	84.56
CDX84108	Canola	plastid	83.29	84.54
CDY35538	Canola	plastid	62.16	79.31
EES12777	Sorghum	plastid	71.99	75.71
Os04t0596900-00	Rice	extracellular, plasma membrane	72.73	73.63
GSMUA_Achr2P09720_001	Banana	cytosol	17.44	70.3
GSMUA_Achr1P23890_001	Banana	plastid	70.27	70.27
Zm00001d002454_P002	Maize	plastid	67.32	65.71
KRH03946	Soybean	cytosol, plastid	17.94	16.04
KRG94497	Soybean	nucleus	18.18	15.55
KRG93941	Soybean	cytosol	17.44	15.54
KRH25953	Soybean	cytosol	8.11	15.42
KRH06964	Soybean	cytosol, nucleus	17.94	15.4
KRH46433	Soybean	cytosol	17.44	14.88
KRG98430	Soybean	cytosol	17.2	14.68
KRH14188	Soybean	cytosol, nucleus	16.71	14.23
KRH73945	Soybean	cytosol	16.46	14.11
KRH49620	Soybean	cytosol	4.18	13.71
KRH05211	Soybean	cytosol	6.39	13.2
KRH26216	Soybean	cytosol	4.67	12.75
KRH75660	Soybean	plastid	8.11	11.54
KRH57219	Soybean	cytosol	2.95	11.01
CDY07734	Canola	plastid	1.72	8.97
KRH65897	Soybean	plastid	7.86	8.79

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	EntrezGene:100807126	Gene3D:3.40.50.300	EMBL:ACUP02005947	EnsemblPlantsGene:GLYMA_09G210900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004849	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975
GO:GO:0006139	GO:GO:0006206	GO:GO:0006222	GO:GO:0008150	GO:GO:0008152	GO:GO:0008974
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0043097	UniProt:I1L540	EnsemblPlants:KRH39632	ProteinID:KRH39632	ProteinID:KRH39632.1
InterPro:P-loop_NTPase	PFAM:PF00485	PRINTS:PR00478	InterPro:PRK	InterPro:PRK/URK	ScanProsite:PS00567
PANTHER:PTHR10285	PANTHER:PTHR10285:SF120	MetaCyc:PWY-5723	SUPFAM:SSF52540	UniParc:UPI0002337D28	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:43486379..43490630

Molecular Weight (calculated)

45299.9 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.292

Length

407 amino acids

Sequence
(BLAST)

001: MAACTVYSTQ SLSTNCSIST PSKTQLSFFH QKQVVFWRNS NRGSSSSRRS YVITCAAGDS QTVVIGLAAD SGCGKSTFMR RLTSVFGGAA EPPKGGNPDS
101: NTLISDTTTV ICLDDYHSLD RTGRKEKGVT ALDPRANDFD LMYEQVKALK DGIAVEKPIY NHVTGLLDPP ELIKPPKILV IEGLHPMYDS RVRDLLDFSI
201: YLDISNEVKF AWKIQRDMAE RGHSLESIKA SIEARKPDFE AYIDPQKQYA DAVIEVLPTQ LIPDDNEGKI LRVRLIQKEG VKYFSPVYLF DDGSTISWIP
301: CGRKLTCSYP GIKFFYGPET YYGNEVSVVE MDGQFDRLDE LIYVESHLSN LSTKFYGEVT QQMLKHADFP GSNNGTGLFQ TIVGLKIRDL YEQLIATKAE
401: TPVAAKA

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.