CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13403	Canola	cytosol	10.26	5.76
CDX94369	Canola	cytosol, plastid, vacuole	6.41	4.03
CDY52697	Canola	cytosol	19.23	3.12
CDY54029	Canola	plastid	11.54	3.11
CDX83666	Canola	cytosol	17.95	2.9
CDY13688	Canola	cytosol	17.95	2.9
CDY34172	Canola	cytosol	17.95	2.9
CDY28487	Canola	cytosol	17.95	2.9
CDY36391	Canola	cytosol	17.95	2.88
CDY00155	Canola	cytosol	15.38	2.63
CDY59158	Canola	plastid	8.97	2.43
CDX67576	Canola	plastid	8.97	2.42
CDY17380	Canola	cytosol	14.1	2.35
CDY28618	Canola	cytosol	14.1	2.35
CDX89330	Canola	cytosol	14.1	2.34
CDY35538	Canola	plastid	7.69	1.88
CDY07735	Canola	plastid	6.41	1.83
Solyc08g076220.2.1	Tomato	plastid	8.97	1.75
CDY10528	Canola	cytosol	10.26	1.74
PGSC0003DMT400024090	Potato	cytosol, extracellular, plastid	8.97	1.73
KRH39632	Soybean	nucleus, plastid	8.97	1.72
KRH74288	Soybean	nucleus, plastid	8.97	1.72
CDY42388	Canola	cytosol	10.26	1.7
CDY70621	Canola	plastid	2.56	1.54
CDY22582	Canola	plastid	7.69	1.51
CDY59208	Canola	plastid	7.69	1.51
CDY41745	Canola	plastid	7.69	1.5
CDX84108	Canola	plastid	7.69	1.5
VIT_02s0109g00080.t01	Wine grape	plastid	7.69	1.47
CDX75814	Canola	endoplasmic reticulum, extracellular	1.28	1.39
CDY20046	Canola	cytosol	15.38	1.39
CDX94320	Canola	cytosol	14.1	1.26
CDY50103	Canola	cytosol	1.28	0.3
CDY54439	Canola	cytosol	0.0	0.0
CDY70546	Canola	cytosol	0.0	0.0
CDY07890	Canola	cytosol	0.0	0.0
CDY72083	Canola	cytosol	0.0	0.0
GSMUA_Achr2P09720_001	Banana	cytosol	0.0	0.0
CDX97201	Canola	cytosol	0.0	0.0
CDX89329	Canola	cytosol	0.0	0.0
CDX73515	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY07734	EnsemblPlantsGene:GSBRNA2T00124855001	ProteinID:CDY07734	ProteinID:CDY07734.1	SEG:seg	UniParc:UPI0004EED1FE
UniProt:A0A078F3W5	MapMan:35.2	:	:	:	:

Description

BnaA03g17770DBnaA03g17770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3W5]

Coordinates

chrLK031980:+:647901..648414

Molecular Weight (calculated)

8669.5 Da

IEP (calculated)

8.054

GRAVY (calculated)

-0.227

Length

78 amino acids

Sequence
(BLAST)

1: MGRDASTLWN PNLFSLAQDR RSPSEPFHLL PPCNTTVETL CSQILQGRES GCDKKWQAYG VGLLLLDAKL LQARIANL

Best Arabidopsis Sequence Match ( AT4G38130.2 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVK

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.