CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72083	Canola	cytosol	50.0	96.88
Bra012086.1-P	Field mustard	mitochondrion	91.94	53.77
CDY07735	Canola	plastid	93.55	42.49
Bra023238.1-P	Field mustard	mitochondrion	91.94	33.83
CDY70621	Canola	plastid	26.61	25.38
CDY59158	Canola	plastid	34.68	14.93
CDX67576	Canola	plastid	34.68	14.88
CDY54029	Canola	plastid	34.68	14.88
Os05t0455700-02	Rice	plastid	30.65	12.62
TraesCS1D01G280900.1	Wheat	plastid	29.84	12.54
TraesCS1B01G290800.1	Wheat	plastid	29.84	12.54
TraesCS1A01G281700.1	Wheat	plastid	29.84	12.54
HORVU1Hr1G072750.2	Barley	plasma membrane	30.65	11.95
CDX73515	Canola	cytosol	13.71	9.83
CDY07734	Canola	plastid	4.03	6.41
CDY50103	Canola	cytosol	12.9	4.86
CDY00155	Canola	cytosol	16.13	4.39
CDX75814	Canola	endoplasmic reticulum, extracellular	2.42	4.17
CDY17380	Canola	cytosol	14.52	3.85
CDY28618	Canola	cytosol	14.52	3.85
CDY52697	Canola	cytosol	14.52	3.75
CDX83666	Canola	cytosol	14.52	3.73
CDY13688	Canola	cytosol	14.52	3.73
CDY36391	Canola	cytosol	14.52	3.7
CDY10528	Canola	cytosol	13.71	3.7
CDX89330	Canola	cytosol	13.71	3.62
CDY42388	Canola	cytosol	13.71	3.61
CDY34172	Canola	cytosol	13.71	3.52
CDY28487	Canola	cytosol	13.71	3.52
CDY41745	Canola	plastid	11.29	3.49
CDX84108	Canola	plastid	11.29	3.49
CDY22582	Canola	plastid	10.48	3.27
CDY59208	Canola	plastid	10.48	3.27
CDY07890	Canola	cytosol	2.42	3.16
CDY70546	Canola	cytosol	2.42	3.16
CDY54439	Canola	cytosol	2.42	3.16
CDY35538	Canola	plastid	7.26	2.82
CDX97201	Canola	cytosol	1.61	2.67
CDY20046	Canola	cytosol	16.13	2.31
CDX94320	Canola	cytosol	13.71	1.95
CDY13403	Canola	cytosol	1.61	1.44
CDX89329	Canola	cytosol	0.81	0.28

Protein Annotations

EnsemblPlants:CDX94369	EnsemblPlantsGene:GSBRNA2T00157488001	GO:A0A078E149	ProteinID:CDX94369	ProteinID:CDX94369.1	TMHMM:TMhelix
UniParc:UPI0004EE62DB	MapMan:35.2	:	:	:	:

Description

BnaC01g18150D

Coordinates

chrLK031881:+:549984..551903

Molecular Weight (calculated)

13832.9 Da

IEP (calculated)

9.100

GRAVY (calculated)

0.044

Length

124 amino acids

Sequence
(BLAST)

001: MSKVLAPPHP LVKHWIFVMR NDQPPTAISL NSFEIVSGNA IAEIGRLLMF EASREWLLVW MHLLAVAGAT IVSSSFGKDE KMAKSEVAVA TTLADALYMK
101: DDEVIAAKRE HLALRRRDSQ SMKQ

Best Arabidopsis Sequence Match ( AT3G53900.2 )
(BLAST)

001: MACSIGNAFR CSSDTLRFAP RQQCSSRLNP NPSSFLSFNS SPILAQNLGA SSSSLSRRTI RARTKMAASE ASINGSNRML VFVPPHPLIK HWISVLRNEQ
101: TPCPVFRNAI AELGRLLMYE ASREWLPTVV GEIMSPMGPA SVEFIDPREP IAVVPILRAG LALAEHASSV LPANKIYHLG VSRDEKTLLP SVYLNKLPDE
201: FPKNSRVFLV DPVLATGGTI MAAMDLLKER GLSVQQIKVI CAIAAPPALS KLNEKFPGLH VYAGIIDPEV NEKGYIIPGL GDAGDRSFGT ETHWVK

Arabidopsis Description

UPPUracil phosphoribosyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M336]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.