CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32060.1	CDY32970	AT5G42980.1	15352244
AT1G32060.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023235.1-P	Field mustard	plastid	100.0	100.0
CDY22582	Canola	plastid	99.5	99.5
CDY41745	Canola	plastid	98.24	97.26
CDX84108	Canola	plastid	97.23	96.26
AT1G32060.1	Thale cress	plastid	94.21	94.68
CDY35538	Canola	plastid	70.28	87.46
KRH74288	Soybean	nucleus, plastid	86.9	84.77
KRH39632	Soybean	nucleus, plastid	86.9	84.77
PGSC0003DMT400024090	Potato	cytosol, extracellular, plastid	86.15	84.44
Solyc08g076220.2.1	Tomato	plastid	84.89	84.25
VIT_02s0109g00080.t01	Wine grape	plastid	84.63	82.35
CDY52697	Canola	cytosol	19.14	15.83
CDY34172	Canola	cytosol	19.14	15.73
CDY00155	Canola	cytosol	17.88	15.57
CDY28487	Canola	cytosol	18.89	15.53
CDY36391	Canola	cytosol	18.89	15.43
CDY17380	Canola	cytosol	17.88	15.17
CDY13688	Canola	cytosol	18.39	15.11
CDX83666	Canola	cytosol	18.39	15.11
CDY13403	Canola	cytosol	5.29	15.11
CDY28618	Canola	cytosol	17.63	14.96
CDX89330	Canola	cytosol	17.63	14.89
CDY70621	Canola	plastid	4.79	14.62
CDY50103	Canola	cytosol	12.09	14.59
CDY10528	Canola	cytosol	16.88	14.57
CDY42388	Canola	cytosol	17.13	14.44
CDX73515	Canola	cytosol	5.54	12.72
CDX97201	Canola	cytosol	2.27	12.0
CDY07890	Canola	cytosol	2.77	11.58
CDX75814	Canola	endoplasmic reticulum, extracellular	2.02	11.11
CDX67576	Canola	plastid	8.06	11.07
CDY59158	Canola	plastid	7.81	10.76
CDY54029	Canola	plastid	7.81	10.73
CDY54439	Canola	cytosol	2.52	10.53
CDY70546	Canola	cytosol	2.52	10.53
CDX94369	Canola	cytosol, plastid, vacuole	3.27	10.48
CDY20046	Canola	cytosol	18.14	8.31
CDY07735	Canola	plastid	5.54	8.06
CDX94320	Canola	cytosol	17.38	7.93
CDY72083	Canola	cytosol	1.26	7.81
CDY07734	Canola	plastid	1.51	7.69
CDX89329	Canola	cytosol	1.01	1.12

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	Gene3D:3.40.50.300	GO:A0A078J785	UniProt:A0A078J785	EnsemblPlants:CDY59208
ProteinID:CDY59208	ProteinID:CDY59208.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008974	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00025724001	InterPro:P-loop_NTPase	PFAM:PF00485
PRINTS:PR00478	InterPro:PRK	InterPro:PRK/URK	ScanProsite:PS00567	PANTHER:PTHR10285	PANTHER:PTHR10285:SF120
MetaCyc:PWY-5723	SUPFAM:SSF52540	UniPathway:UPA00116	UniParc:UPI000254235A	SEG:seg	:

Description

BnaA09g54020DPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A078J785]

Coordinates

chrLK033739:-:20354..22602

Molecular Weight (calculated)

44417.9 Da

IEP (calculated)

5.487

GRAVY (calculated)

-0.277

Length

397 amino acids

Sequence
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SPSSSSKQVF FYRRQTNRRF NTIITCAAQQ TVVIGLAADS GCGKSTFMRR LTSVFGGAAE PPKGGNPDSN TLISDMTTVI
101: CLDDYHSLDR TGRKEKGVTA LDPRANDFDL MYEQVKALKS GIAVEKPIYN HVTGLLDAPE LIQPPKILVI EGLHPMFDER VRELLDFSIY LDISNEVKFA
201: WKIQRDMAER GHSLESIKAS IEARKPDFDA FIDPQKQYAD AVIEVLPTQL IPDDNEGKVL RVRLIMKEGV KYFSPVYLFD EGSTISWIPC GRKLTCSYPG
301: IKFNYQPDSY FDNEVSVVEM DGQFDRLDEL IYVESHLSNL STKFYGEVTQ QMLKHADFPG SNNGTGLFQT IVGLKIRDLY EQLIANKANA PTEAAKA

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.