CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003159.1-P	Field mustard	plastid	77.78	99.56
CDX67576	Canola	plastid	97.57	97.23
CDX73515	Canola	cytosol	57.99	96.53
CDY70621	Canola	plastid	42.36	93.85
CDY54029	Canola	plastid	90.97	90.66
AT3G53900.2	Thale cress	plastid	87.85	85.47
VIT_08s0007g01100.t01	Wine grape	cytosol	61.11	77.53
PGSC0003DMT400022940	Potato	cytosol	34.03	75.38
KRH75660	Soybean	plastid	63.89	64.34
Solyc09g011300.2.1	Tomato	plastid	62.85	63.29
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	58.68	62.83
Zm00001d024109_P001	Maize	cytosol	47.22	59.65
KXG25691	Sorghum	cytosol	49.31	57.49
TraesCS1D01G280900.1	Wheat	plastid	55.9	54.58
TraesCS1A01G281700.1	Wheat	plastid	55.9	54.58
TraesCS1B01G290800.1	Wheat	plastid	55.56	54.24
Os05t0455700-02	Rice	plastid	56.25	53.82
KRH65897	Soybean	plastid	65.62	51.92
HORVU1Hr1G072750.2	Barley	plasma membrane	55.9	50.63
CDX94369	Canola	cytosol, plastid, vacuole	14.93	34.68
CDY07735	Canola	plastid	25.35	26.74
CDX97201	Canola	cytosol	6.6	25.33
CDY07890	Canola	cytosol	8.33	25.26
CDY70546	Canola	cytosol	8.33	25.26
CDY54439	Canola	cytosol	7.64	23.16
CDY50103	Canola	cytosol	19.44	17.02
CDX75814	Canola	endoplasmic reticulum, extracellular	4.17	16.67
CDY72083	Canola	cytosol	3.12	14.06
CDY00155	Canola	cytosol	21.88	13.82
CDY52697	Canola	cytosol	22.22	13.33
CDY36391	Canola	cytosol	22.22	13.17
CDX83666	Canola	cytosol	21.88	13.04
CDY34172	Canola	cytosol	21.88	13.04
CDY13688	Canola	cytosol	21.88	13.04
CDY28487	Canola	cytosol	21.88	13.04
CDY28618	Canola	cytosol	20.83	12.82
CDY17380	Canola	cytosol	20.83	12.82
CDX89330	Canola	cytosol	20.83	12.77
CDY42388	Canola	cytosol	18.75	11.46
CDY10528	Canola	cytosol	17.71	11.09
CDY07734	Canola	plastid	2.43	8.97
CDY22582	Canola	plastid	10.76	7.81
CDY59208	Canola	plastid	10.76	7.81
CDY20046	Canola	cytosol	22.57	7.51
CDX84108	Canola	plastid	10.42	7.48
CDY41745	Canola	plastid	10.42	7.48
CDX94320	Canola	cytosol	20.49	6.78
CDY13403	Canola	cytosol	2.43	5.04
CDY35538	Canola	plastid	4.86	4.39
CDX89329	Canola	cytosol	1.39	1.12

Protein Annotations

KEGG:00240+2.4.2.9	Gene3D:3.40.50.2020	MapMan:6.2.2.2	GO:A0A078J4V5	UniProt:A0A078J4V5	EnsemblPlants:CDY59158
ProteinID:CDY59158	ProteinID:CDY59158.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004845	GO:GO:0006139
GO:GO:0006223	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00025628001	PFAM:PF14681	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10285
PANTHER:PTHR10285:SF46	MetaCyc:PWY-7183	SUPFAM:SSF53271	TIGRFAMs:TIGR01091	UniPathway:UPA00574	UniParc:UPI0004EB4FC7
InterPro:Ura_phspho_trans	SEG:seg	:	:	:	:

Description

BnaC06g42560DBnaC06g42560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4V5]

Coordinates

chrLK033734:-:3684..6439

Molecular Weight (calculated)

31282.1 Da

IEP (calculated)

8.883

GRAVY (calculated)

0.036

Length

288 amino acids

Sequence
(BLAST)

001: MGYSISNAFR CYSETLRFGP RQDQCGRVNP SPSSLLSFNS SSPFLGQTLG ASLSRRNIPV RAKMAASEGS INASNRMLVF VPPHPLIKHW ISVLRNDQTP
101: CPIFRNAIGE LGRLLMYEAS REWLPTVVGE IMSPMGAASV EFIDPREPIA VVPILRAGLA LAEHASTVLP ANKIYHLGIS RDEKTLLPSV YLNKLPDEFP
201: KNSRVFLVDP MLATGGTIIA AMDMLKERGL SVQQIKVICA VAAPPALSKL NEKYPGLHVY AGIIDPEVNE KGFIIPGLGD AGDRSFGT

Best Arabidopsis Sequence Match ( AT3G53900.2 )
(BLAST)

001: MACSIGNAFR CSSDTLRFAP RQQCSSRLNP NPSSFLSFNS SPILAQNLGA SSSSLSRRTI RARTKMAASE ASINGSNRML VFVPPHPLIK HWISVLRNEQ
101: TPCPVFRNAI AELGRLLMYE ASREWLPTVV GEIMSPMGPA SVEFIDPREP IAVVPILRAG LALAEHASSV LPANKIYHLG VSRDEKTLLP SVYLNKLPDE
201: FPKNSRVFLV DPVLATGGTI MAAMDLLKER GLSVQQIKVI CAIAAPPALS KLNEKFPGLH VYAGIIDPEV NEKGYIIPGL GDAGDRSFGT ETHWVK

Arabidopsis Description

UPPUracil phosphoribosyltransferase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M336]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.