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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400024090 Potato cytosol, extracellular, plastid 97.25 96.05
Bra035516.1-P Field mustard cytosol 44.0 92.15
VIT_02s0109g00080.t01 Wine grape plastid 87.75 86.03
KRH74288 Soybean nucleus, plastid 87.5 86.0
KRH39632 Soybean nucleus, plastid 87.25 85.75
CDY59208 Canola plastid 84.25 84.89
CDY22582 Canola plastid 84.25 84.89
CDY41745 Canola plastid 84.75 84.54
CDX84108 Canola plastid 83.75 83.54
AT1G32060.1 Thale cress plastid 82.0 83.04
EES12777 Sorghum plastid 74.25 76.74
CDY35538 Canola plastid 60.5 75.86
Os04t0596900-00 Rice extracellular, plasma membrane 75.5 75.12
Zm00001d002454_P002 Maize plastid 69.5 66.67
GSMUA_Achr5P03660_001 Banana plastid 70.25 63.57
Solyc07g065890.2.1 Tomato cytosol, plastid 18.0 16.14
Solyc10g005880.2.1 Tomato cytosol 16.25 15.4
Solyc06g065580.2.1 Tomato cytosol 18.5 15.32
Solyc02g067880.1.1 Tomato cytosol 17.0 15.28
Solyc09g011300.2.1 Tomato plastid 7.75 10.84
Solyc03g063860.1.1 Tomato cytosol 3.25 9.03
CDY07734 Canola plastid 1.75 8.97
Protein Annotations
KEGG:00710+2.7.1.19MapMan:1.2.11Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004849GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005975GO:GO:0006139GO:GO:0006206GO:GO:0006222
GO:GO:0008150GO:GO:0008152GO:GO:0008974GO:GO:0009058GO:GO:0009507GO:GO:0009536
GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0043097UniProt:K4CMY9
InterPro:P-loop_NTPasePFAM:PF00485PRINTS:PR00478InterPro:PRKInterPro:PRK/URKScanProsite:PS00567
PANTHER:PTHR10285PANTHER:PTHR10285:SF120SUPFAM:SSF52540EnsemblPlantsGene:Solyc08g076220.2EnsemblPlants:Solyc08g076220.2.1UniParc:UPI000276BCC8
SEG:seg:::::
Description
Phosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:K4CMY9]
Coordinates
chr8:+:60239726..60244850
Molecular Weight (calculated)
44424.1 Da
IEP (calculated)
6.322
GRAVY (calculated)
-0.285
Length
400 amino acids
Sequence
(BLAST)
001: MAVCTVYTAQ SLNSSCSIST PSKPHLRFHQ KQVIFLTKRP RKMTCSASSD GEKTVVIGLA ADSGCGKSTF MRRLTSVFGG AAEPPKGGNP DSNTLISDMT
101: TVICLDDYHS LDRTGRKEKG VTALDPRAND FDLMYEQVKA IKDGVPVDKP IYNHVSGLLD PPEVIKPPKI LVIEGLHPMY DERVRDLLDF SIYLDISNEV
201: KFAWKIQRDM AERGHSLESI KASIEARKPD FDAYIDPQKQ YADAVIEVLP TQLIPDDNEG KVLRVRLIMK EGVKNFNPVY LFDEGSTISW IPCGRKLTCS
301: YPGIKFTYGP DTYFGNEVSV LEMDGQFDRL DELIYVESHL SNLSSKFYGE VTQQMLKHAD FPGSNNGTGF FQTIVGLKIR DLYEQIVASR AGAPVAAAKA
Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)
001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA
Arabidopsis Description
PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.