Factsheet for PGSC0003DMT400024090

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076220.2.1	Tomato	plastid	96.05	97.25
Bra035516.1-P	Field mustard	cytosol	43.46	92.15
VIT_02s0109g00080.t01	Wine grape	plastid	87.65	87.01
KRH39632	Soybean	nucleus, plastid	87.41	86.98
KRH74288	Soybean	nucleus, plastid	87.41	86.98
CDY59208	Canola	plastid	84.44	86.15
CDY22582	Canola	plastid	84.44	86.15
CDY41745	Canola	plastid	84.94	85.79
CDX84108	Canola	plastid	83.95	84.79
AT1G32060.1	Thale cress	plastid	82.22	84.3
CDY35538	Canola	plastid	60.74	77.12
EES12777	Sorghum	plastid	73.33	76.74
Os04t0596900-00	Rice	extracellular, plasma membrane	75.31	75.87
Zm00001d002454_P002	Maize	plastid	68.64	66.67
GSMUA_Achr5P03660_001	Banana	plastid	70.37	64.48
PGSC0003DMT400037253	Potato	cytosol	18.02	15.63
PGSC0003DMT400067208	Potato	cytosol, plastid	18.52	15.46
PGSC0003DMT400017925	Potato	cytosol	13.33	15.13
PGSC0003DMT400022940	Potato	cytosol	3.46	10.77
CDY07734	Canola	plastid	1.73	8.97

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	EntrezGene:102591470	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008974	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	UniProt:M1AJF6
InterPro:P-loop_NTPase	PFAM:PF00485	EnsemblPlantsGene:PGSC0003DMG400009317	PGSC:PGSC0003DMG400009317	EnsemblPlants:PGSC0003DMT400024090	PRINTS:PR00478
InterPro:PRK	InterPro:PRK/URK	ScanProsite:PS00567	PANTHER:PTHR10285	PANTHER:PTHR10285:SF120	SUPFAM:SSF52540
UniParc:UPI0002958FAA	RefSeq:XP_006352922.1	:	:	:	:

Description

Phosphoribulokinase [Source:PGSC_GENE;Acc:PGSC0003DMG400009317]

Coordinates

chr8:+:48800792..48805673

Molecular Weight (calculated)

44868.5 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.267

Length

405 amino acids

Sequence
(BLAST)

001: MAVCTVYTAQ SLNSSCSIST PSKSHLGFHQ KQVIFFTKRS TNKSRNTVIT CSASDAEKTV VIGLAADSGC GKSTFMRRLT SVFGGAAEPP KGGNPDSNTL
101: ISDMTTVICL DDYHSLDRTG RKEKGVTALD PRANDFDLMY EQVKAIKDGV AVDKPIYNHV SGLLDPPEVI KPPKILVIEG LHPMYDERVR DLLDFSIYLD
201: ISNEVKFAWK IQRDMAERGH SLESIKASIE ARKPDFDAYI DPQKQYADAV IEVLPTQLIP DDNEGKVLRV RLIMKEGVKN FNPVYLFDEG STISWIPCGR
301: KLTCSYPGIK FTYGPDTYFG NEVSVLEMDG QFDRLDELIY VESHLSNLSS KFYGEVTQQM LKHADFPGSN NGTGFFQTIV GLKIRDLYEQ IVASRAGAPV
401: TAAKA

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.