CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94497	Soybean	nucleus	98.1	97.69
Solyc06g065580.2.1	Tomato	cytosol	89.24	87.58
PGSC0003DMT400067208	Potato	cytosol, plastid	89.03	87.01
KRH03946	Soybean	cytosol, plastid	78.9	82.2
KRG98430	Soybean	cytosol	75.74	75.26
KRH46433	Soybean	cytosol	75.32	74.84
KRH49620	Soybean	cytosol	19.41	74.19
VIT_17s0000g01600.t01	Wine grape	cytosol	35.44	74.01
KRH14188	Soybean	cytosol, nucleus	73.63	73.01
KRH73945	Soybean	cytosol	73.0	72.84
KRH57219	Soybean	cytosol	16.03	69.72
KRG93941	Soybean	cytosol	65.61	68.05
KRH26216	Soybean	cytosol	21.31	67.79
KRH05211	Soybean	cytosol	21.94	52.79
KRH25953	Soybean	cytosol	23.63	52.34
KRH75660	Soybean	plastid	17.72	29.37
KRH65897	Soybean	plastid	18.14	23.63
KRH39632	Soybean	nucleus, plastid	15.4	17.94
KRH74288	Soybean	nucleus, plastid	15.4	17.94

Protein Annotations

KEGG:00240+2.4.2.9+2.7.1.48	KEGG:00240+2.7.1.48	KEGG:00983+2.7.1.48	EntrezGene:100780005	Gene3D:3.40.50.2020	Gene3D:3.40.50.300
MapMan:6.2.2.1	EMBL:ACUP02009903	EnsemblPlantsGene:GLYMA_16G058200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004849	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006206	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009116	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0043097	GO:GO:0044206	GO:GO:0044211	UniProt:I1MLJ3	EnsemblPlants:KRH06964	ProteinID:KRH06964
ProteinID:KRH06964.1	InterPro:P-loop_NTPase	PFAM:PF00485	PFAM:PF14681	PRINTS:PR00988	InterPro:PRK/URK
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10285	PANTHER:PTHR10285:SF115	MetaCyc:PWY-7183	MetaCyc:PWY-7193
SUPFAM:SSF52540	SUPFAM:SSF53271	TIGRFAMs:TIGR00235	InterPro:UCKL_plant	UniParc:UPI000233AA6F	InterPro:Uridine_kinase-like
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:5703879..5710543

Molecular Weight (calculated)

53235.9 Da

IEP (calculated)

6.466

GRAVY (calculated)

-0.204

Length

474 amino acids

Sequence
(BLAST)

001: MPEETTSIDY VMEAASGPHF SGLRLDGRVP SSATAASSTP DSTLTLDSLP NQPFVIGVSG GTASGKTTVC DMIIQQLHDH RVVLVNQDSF YRGLNPEELE
101: RVHEYNFDHP DAFDTEQLLE CTRKLISGQG VHVPIYDFKK HQRSSDSFRQ VNASDVIILE GILVFHDQRV RDLMNMKIFV DADADVRLAR RIRRDTVERG
201: RDINSVLEQY AKFVKPAFDD FVLPSKKYAD VIIPRGGDNH VAIDLIVQHI RTKLGQHDLC KIYPNVYVIQ STFQIRGMHT LIRDRDISKH DFVFYSDRLI
301: RLVVEHGLGH LPFTEKQVVT PTGSVYTGVD FCKKLCGVSI VRSGESMENA LRACCKGIKI GKILIHRDGD NGKQLIYEKL PKDISERHVL LLDPVLATGN
401: SANQAIELLI QKGVPESHII FLNLISAPEG IHCVCKRFPS LKIVTSEIDI EINEEYRVIP GLGEFGDRYF GTDD

Best Arabidopsis Sequence Match ( AT5G40870.1 )
(BLAST)

001: MPEDSSSLDY AMEKASGPHF SGLRFDGLLS SSPPNSSVVS SLRSAVSSSS PSSSDPEAPK QPFIIGVSGG TASGKTTVCD MIIQQLHDHR VVLVNQDSFY
101: RGLTSEELQR VQEYNFDHPD AFDTEQLLHC AETLKSGQPY QVPIYDFKTH QRRSDTFRQV NASDVIILEG ILVFHDSRVR NLMNMKIFVD TDADVRLARR
201: IRRDTVERGR DVNSVLEQYA KFVKPAFDDF VLPSKKYADV IIPRGGDNHV AVDLITQHIH TKLGQHDLCK IYPNVYVIQS TFQIRGMHTL IREKDISKHD
301: FVFYSDRLIR LVVEHGLGHL PFTEKQVVTP TGAVYTGVDF CKKLCGVSII RSGESMENAL RACCKGIKIG KILIHRDGDN GKQLIYEKLP HDISERHVLL
401: LDPVLATGNS ANQAIELLIQ KGVPEAHIIF LNLISAPEGI HCVCKRFPAL KIVTSEIDQC LNQEFRVIPG LGEFGDRYFG TDEEDQ

Arabidopsis Description

UKL1Uridine kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UHR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.