CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73945	Soybean	cytosol	95.4	96.0
CDY50103	Canola	cytosol	63.18	91.79
KRG98430	Soybean	cytosol	91.42	91.61
KRH46433	Soybean	cytosol	91.0	91.19
Solyc10g005880.2.1	Tomato	cytosol	78.24	88.63
VIT_19s0015g01730.t01	Wine grape	cytosol	87.24	87.06
Solyc07g065890.2.1	Tomato	cytosol, plastid	81.17	87.0
PGSC0003DMT400037253	Potato	cytosol	83.47	85.44
CDY28618	Canola	cytosol	83.26	85.04
Bra002854.1-P	Field mustard	cytosol	83.05	84.83
CDY17380	Canola	cytosol	83.05	84.83
AT4G26510.2	Thale cress	cytosol	83.05	84.65
Bra026427.1-P	Field mustard	cytosol	80.54	81.91
Bra030832.1-P	Field mustard	cytosol	76.99	81.78
CDY42388	Canola	cytosol	80.13	81.32
CDY10528	Canola	cytosol	77.82	80.87
AT1G55810.5	Thale cress	cytosol	81.38	79.71
GSMUA_Achr4P15950_001	Banana	cytosol	77.82	79.32
GSMUA_Achr8P34310_001	Banana	cytosol	76.36	77.99
KXG24145	Sorghum	cytosol	73.43	74.36
KRH06964	Soybean	cytosol, nucleus	73.01	73.63
KRG94497	Soybean	nucleus	73.22	73.53
KRH03946	Soybean	cytosol, plastid	69.87	73.41
Os11t0265000-01	Rice	cytosol	74.69	72.71
TraesCS4D01G098900.1	Wheat	cytosol	73.64	71.98
TraesCS4B01G102200.1	Wheat	cytosol	73.64	71.98
TraesCS4A01G213800.1	Wheat	cytosol	73.64	71.98
GSMUA_AchrUn_...	Banana	cytosol	68.2	71.18
KRG93941	Soybean	cytosol	66.11	69.15
HORVU4Hr1G043970.12	Barley	cytosol	71.55	69.09
KRH57219	Soybean	cytosol	15.06	66.06
Zm00001d054105_P012	Maize	cytosol	74.06	64.6
KXG29238	Sorghum	mitochondrion	75.94	60.8
KRH05211	Soybean	cytosol	23.01	55.84
KRH49620	Soybean	cytosol	13.6	52.42
CDX94320	Canola	cytosol	79.08	43.45
KRH26216	Soybean	cytosol	13.39	42.95
KRH25953	Soybean	cytosol	16.74	37.38
KRH75660	Soybean	plastid	15.9	26.57
KRH65897	Soybean	plastid	15.9	20.88
KRH74288	Soybean	nucleus, plastid	14.44	16.95
KRH39632	Soybean	nucleus, plastid	14.23	16.71
Bra026426.1-P	Field mustard	cytosol	1.26	1.68

Protein Annotations

KEGG:00240+2.7.1.48	KEGG:00983+2.7.1.48	EntrezGene:100798205	Gene3D:3.40.50.2020	Gene3D:3.40.50.300	MapMan:6.2.2.1
EMBL:ACUP02008494	EnsemblPlantsGene:GLYMA_14G011000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004849
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006206	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009116	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0043097
GO:GO:0044206	GO:GO:0044211	UniProt:K7M4A7	EnsemblPlants:KRH14188	ProteinID:KRH14188	ProteinID:KRH14188.1
InterPro:P-loop_NTPase	PFAM:PF00485	PFAM:PF14681	PRINTS:PR00988	InterPro:PRK/URK	InterPro:PRTase-like
InterPro:PRibTrfase_dom	PANTHER:PTHR10285	PANTHER:PTHR10285:SF97	MetaCyc:PWY-7193	SUPFAM:SSF52540	SUPFAM:SSF53271
TIGRFAMs:TIGR00235	UniParc:UPI000233BC7D	InterPro:Uridine_kinase-like	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:830247..838714

Molecular Weight (calculated)

53749.8 Da

IEP (calculated)

6.758

GRAVY (calculated)

-0.211

Length

478 amino acids

Sequence
(BLAST)

001: MGTKSAVDLM ESLSEVHFSG FHMDGLEQRK AGTEQPTTSA TDMYKQPFVI GVAGGAASGK TSVCDMIVQQ LHDQRVVLVN QDSFYHNLTE EELTRVQDYN
101: FDHPEAFDTE QLLRVMDKLK HSQAVDIPKY DFKGYKNDVF PARRVNPADV IILEGILVFH DPRVRALMNM KIFVDTDADV RLARRIKRDT ADNAREIGAV
201: LDQYSKFVKP AFDDFILPTK KYADIIIPRG GDNHVAIDLI VQHIRTKLGQ HDLCKIYPNL YVIQSTFQIR GMHTLIRDSQ TTKHDFVFYS DRLIRLVVEH
301: GLGHLPFTEK QVITPTGSVY SGVDFCKRLC GVSIIRSGES MENALRACCK GIKIGKILIH REGDNGQQLI YEKLPNDISD RHVLLLDPIL GTGNSAVQAI
401: SLLLKKGVPE SNIIFLNLVS APQGVHVVCK RFPRIKILTS EIEIGLNEDF RVIPGMGEFG DRYFGTDNDD QQVVPPSQ

Best Arabidopsis Sequence Match ( AT4G26510.1 )
(BLAST)

001: MGSKSVVDMI EAASRAHFSG LHVNGHMNGL EPSALKETTS ASEDIQRQPF VIGVAGGAAS GKTTVCDMII QQLHDQRVVL INLDSFYHNL TEEELARVHE
101: YNFDHPDAFD TEHLLSCMEK LRQGQAVDIP KYDFKTYRSS VFRRVNPTDV IILEGILLFH DPRVRKLMNM KIFVCTDADV RLARRIKRDT VENGRDIGTV
201: LDQYSKFVKP AFDDFILPTK KYADIIIPRG GDNHVAIDLI VQHICTKLGQ HDLCKIYPNL YVIHSTFQIR GMHTLIRDSQ TTKHDFVFYS DRLIRLVVEH
301: GLGHLPFTEK QVITPTGCVY SGVDFCKRLC GVSVIRSGES MENALRACCK GIKIGKILIH REGDNGQQLV YEKLPNDISE RHVLLLDPIL GTGNSAVEAI
401: NLLISKGVPE GNIIFLNLIS APQGVHVVCK KFPRIKIVTS EIDNGLNEEF RVIPGMGEFG DRYFGTDDD

Arabidopsis Description

UKL4Uridine kinase-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O65583]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.