CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06964	Soybean	cytosol, nucleus	97.69	98.1
Solyc06g065580.2.1	Tomato	cytosol	88.66	87.37
PGSC0003DMT400067208	Potato	cytosol, plastid	88.45	86.8
KRH03946	Soybean	cytosol, plastid	77.94	81.54
KRG98430	Soybean	cytosol	75.63	75.47
KRH46433	Soybean	cytosol	75.21	75.05
VIT_17s0000g01600.t01	Wine grape	cytosol	35.29	74.01
KRH49620	Soybean	cytosol	19.12	73.39
KRH14188	Soybean	cytosol, nucleus	73.53	73.22
KRH73945	Soybean	cytosol	72.9	73.05
KRH57219	Soybean	cytosol	15.97	69.72
KRG93941	Soybean	cytosol	65.34	68.05
KRH26216	Soybean	cytosol	21.22	67.79
KRH05211	Soybean	cytosol	21.85	52.79
KRH25953	Soybean	cytosol	23.53	52.34
KRH75660	Soybean	plastid	17.65	29.37
KRH65897	Soybean	plastid	17.86	23.35
KRH39632	Soybean	nucleus, plastid	15.55	18.18
KRH74288	Soybean	nucleus, plastid	15.55	18.18

Protein Annotations

KEGG:00240+2.4.2.9+2.7.1.48	KEGG:00240+2.7.1.48	KEGG:00983+2.7.1.48	EntrezGene:100786137	Gene3D:3.40.50.2020	Gene3D:3.40.50.300
MapMan:6.2.2.1	UniProt:A0A0R4J5Y3	EMBL:ACUP02011967	EnsemblPlantsGene:GLYMA_19G089100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004849	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006206	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0043097	GO:GO:0044206	GO:GO:0044211	EnsemblPlants:KRG94497	ProteinID:KRG94497
ProteinID:KRG94497.1	InterPro:P-loop_NTPase	PFAM:PF00485	PFAM:PF14681	PRINTS:PR00988	InterPro:PRK/URK
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10285	PANTHER:PTHR10285:SF115	MetaCyc:PWY-7183	MetaCyc:PWY-7193
SUPFAM:SSF52540	SUPFAM:SSF53271	TIGRFAMs:TIGR00235	InterPro:UCKL_plant	UniParc:UPI0001E40407	InterPro:Uridine_kinase-like
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:31719560..31727425

Molecular Weight (calculated)

53423.1 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.199

Length

476 amino acids

Sequence
(BLAST)

001: MPEETTSIDY VMEAASGPHF SGLRLDGRMP SSATAAAASS SADSTLTPDF LPNQPFVIGV SGGTASGKTT VCDMIIQQLH DHRVVLVNQD SFYRGLNPEE
101: LERVHEYNFD HPDAFDTEQL LECTMKLISG QGVHVPIYDF KKHQRSSDSF RQVNASDVII LEGILVFHDQ RVRDLMNMKI FVDTDADVRL ARRIRRDTME
201: RGRDINSVLE QYAKFVKPAF DDFVLPSKKY ADVIIPRGGD NHVAIDLIVQ HIRTKLGQHD LCKIYPNAYV IQSTFQIRGM HTLIRDRDIS KHDFVFYSDR
301: LIRLVVEHGL GHLPFTEKQV VTPTGSVYTG VDFCKKLCGV SIVRSGESME NALRACCKGI KIGKILIHRD GDNGKQLIYE KLPKDISERH VLLLDPVLAT
401: GNSANQAIEL LIQKGVPESH IIFLNLISAP EGIHCVCKRF PSLKIVTSEI DIEINEEYRV IPGLGEFGDR YFGTDD

Best Arabidopsis Sequence Match ( AT5G40870.1 )
(BLAST)

001: MPEDSSSLDY AMEKASGPHF SGLRFDGLLS SSPPNSSVVS SLRSAVSSSS PSSSDPEAPK QPFIIGVSGG TASGKTTVCD MIIQQLHDHR VVLVNQDSFY
101: RGLTSEELQR VQEYNFDHPD AFDTEQLLHC AETLKSGQPY QVPIYDFKTH QRRSDTFRQV NASDVIILEG ILVFHDSRVR NLMNMKIFVD TDADVRLARR
201: IRRDTVERGR DVNSVLEQYA KFVKPAFDDF VLPSKKYADV IIPRGGDNHV AVDLITQHIH TKLGQHDLCK IYPNVYVIQS TFQIRGMHTL IREKDISKHD
301: FVFYSDRLIR LVVEHGLGHL PFTEKQVVTP TGAVYTGVDF CKKLCGVSII RSGESMENAL RACCKGIKIG KILIHRDGDN GKQLIYEKLP HDISERHVLL
401: LDPVLATGNS ANQAIELLIQ KGVPEAHIIF LNLISAPEGI HCVCKRFPAL KIVTSEIDQC LNQEFRVIPG LGEFGDRYFG TDEEDQ

Arabidopsis Description

UKL1Uridine kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UHR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.