Factsheet for VIT_16s0039g02140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0109g00080.t01	Wine grape	plastid	66.91	66.91
VIT_17s0000g01620.t01	Wine grape	cytosol	20.1	17.37
VIT_14s0171g00090.t01	Wine grape	cytosol	18.87	15.98
VIT_19s0015g01730.t01	Wine grape	cytosol	17.65	15.03
VIT_08s0007g01100.t01	Wine grape	cytosol	6.86	12.33
VIT_17s0000g01600.t01	Wine grape	cytosol	6.37	11.45
VIT_14s0066g00270.t01	Wine grape	endoplasmic reticulum, golgi	17.89	7.1

Protein Annotations

KEGG:00710+2.7.1.19	MapMan:1.2.11	EntrezGene:100256246	wikigene:100256246	Gene3D:3.40.50.300	ProteinID:CCB50607
ProteinID:CCB50607.1	ncoils:Coil	UniProt:F6HEG1	EMBL:FN595750	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004849	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0006206
GO:GO:0006222	GO:GO:0008150	GO:GO:0008152	GO:GO:0008974	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0043097
EntrezGene:LOC100256246	wikigene:LOC100256246	InterPro:P-loop_NTPase	PFAM:PF00485	PRINTS:PR00478	InterPro:PRK
InterPro:PRK/URK	ScanProsite:PS00567	PANTHER:PTHR10285	PANTHER:PTHR10285:SF120	SUPFAM:SSF52540	TIGR:TC58640
UniParc:UPI0001984D86	ArrayExpress:VIT_16s0039g02140	EnsemblPlantsGene:VIT_16s0039g02140	EnsemblPlants:VIT_16s0039g02140.t01	unigene:Vvi.3375	RefSeq:XP_002274133
RefSeq:XP_002274133.1	RefSeq:XP_002274133.3	SEG:seg	:	:	:

Description

Phosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:F6HEG1]

Coordinates

chr16:+:2190827..2193557

Molecular Weight (calculated)

45849.9 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.294

Length

408 amino acids

Sequence
(BLAST)

001: MTISMVFRAN SINHTPSFPN PTKTHFLSPQ NLLHFYKKTP LKNHIGEFSC SSPGPVVVGL AADSGCGKTT FMKRLTSVFG GAPKADHNHQ NPDSNTLITD
101: TTTVICLDDY HLLDRKERKE KGVTALHPRA NNFDLMFEQI EALKHGFPIE KPIYNHATGL LDPPELIHPP KILVLEGLHP LYDSRVRDLL DFSIYLDISN
201: EVKFSWKIQR DMAERGHSLE SVRASIKARK SDFDAYIEPQ KQYASVVMEV LPTQLIPDDT ERKVLRVRLI MKESGVKNFQ PIYIFDEGST ISWVPCGRKL
301: TCSYPGIKFF CGPEAYFENE VTVLEMDGEF DKLEELVYVE GHLCNVSTKF YGEVTQQMLK NCDFEGSNNG TGFFQTLIAL KIRDLYEQVA MSNGVGDGVG
401: VGSLASTK

Best Arabidopsis Sequence Match ( AT1G32060.1 )
(BLAST)

001: MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC
101: LDDYHSLDRY GRKEQKVTAL DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV RDLLDFSIYL DISNEVKFAW
201: KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA VIEVLPTTLI PDDNEGKVLR VRLIMKEGVK YFSPVYLFDE GSTISWIPCG RKLTCSYPGI
301: KFNYEPDSYF DHEVSVLEMD GQFDRLDELI YVESHLSNLS TKFYGEVTQQ MLKHADFPGS NNGTGLFQTI VGLKIRDLYE QLIANKATAR AEAKA

Arabidopsis Description

PRKPhosphoribulokinase [Source:UniProtKB/TrEMBL;Acc:A0A178WLP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.