Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 6
- endoplasmic reticulum 4
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98028 | Canola | plastid | 88.21 | 97.49 |
| CDY19412 | Canola | plastid | 88.21 | 97.49 |
| Bra019797.1-P | Field mustard | plastid | 87.98 | 97.24 |
| Bra026948.1-P | Field mustard | plastid | 87.53 | 96.74 |
| CDY16038 | Canola | plastid | 87.53 | 96.74 |
| CDY26599 | Canola | plastid | 87.53 | 96.74 |
| AT3G26650.1 | Thale cress | plastid | 81.41 | 90.66 |
| VIT_14s0068g00680.t01 | Wine grape | plastid | 80.27 | 87.62 |
| TraesCS2D01G322900.1 | Wheat | plastid | 78.46 | 86.28 |
| TraesCS2B01G342200.1 | Wheat | plastid | 78.46 | 86.28 |
| KRG94751 | Soybean | extracellular, nucleus | 78.68 | 86.1 |
| TraesCS2A01G344600.1 | Wheat | golgi, plastid | 78.23 | 86.03 |
| KRH06774 | Soybean | nucleus | 78.46 | 85.86 |
| PGSC0003DMT400030050 | Potato | cytosol | 77.55 | 85.71 |
| Solyc04g009030.2.1 | Tomato | plastid | 77.1 | 85.21 |
| Os04t0459500-02 | Rice | plastid | 77.32 | 84.83 |
| HORVU0Hr1G004830.6 | Barley | plastid | 78.23 | 84.56 |
| Zm00001d003429_P001 | Maize | plastid | 76.64 | 83.87 |
| GSMUA_Achr10P... | Banana | plastid | 58.5 | 82.17 |
| Solyc02g020940.2.1 | Tomato | plastid | 75.51 | 81.42 |
| KXG26468 | Sorghum | plastid | 75.96 | 80.14 |
| Zm00001d025607_P001 | Maize | cytosol, plastid | 66.89 | 79.3 |
| Zm00001d025599_P001 | Maize | plastid | 71.66 | 78.41 |
| GSMUA_Achr6P16250_001 | Banana | plastid | 77.32 | 77.85 |
| Zm00001d025593_P001 | Maize | plastid | 70.98 | 77.67 |
| KRH70104 | Soybean | plastid | 46.94 | 75.0 |
| AT1G42970.1 | Thale cress | plastid | 65.99 | 65.1 |
| AT1G13440.1 | Thale cress | cytosol | 36.73 | 47.93 |
| AT3G04120.1 | Thale cress | cytosol | 36.51 | 47.63 |
| AT1G79530.1 | Thale cress | plastid | 40.82 | 42.65 |
| AT1G16300.1 | Thale cress | plastid | 39.46 | 41.43 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:1.2.3 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | EntrezGene:837848 |
| UniProt:A0A1P8APR6 | ProteinID:AAF78494.1 | ProteinID:AEE28944.1 | ProteinID:AEE28946.1 | ProteinID:AEE28947.1 | EMBL:AK318953 |
| ProteinID:ANM58638.1 | ArrayExpress:AT1G12900 | EnsemblPlantsGene:AT1G12900 | RefSeq:AT1G12900 | TAIR:AT1G12900 | RefSeq:AT1G12900-TAIR-G |
| EnsemblPlants:AT1G12900.5 | Unigene:At.28212 | EMBL:BT008637 | EMBL:BT015867 | Symbol:GAPA-2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0016620 | GO:GO:0019253 |
| GO:GO:0047100 | GO:GO:0048046 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | InterPro:GlycerAld/Erythrose_P_DH |
| InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_001117276.1 |
| RefSeq:NP_001184977.1 | RefSeq:NP_001321059.1 | RefSeq:NP_172750.1 | ProteinID:OAP14974.1 | PFAM:PF00044 | PFAM:PF02800 |
| PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR43148 | PANTHER:PTHR43148:SF5 | SMART:SM00846 | SUPFAM:SSF51735 |
| SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | TMHMM:TMhelix | UniParc:UPI00084857D2 | SEG:seg | : |
Description
GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
Coordinates
chr1:-:4392438..4394454
Molecular Weight (calculated)
47607.0 Da
IEP (calculated)
8.441
GRAVY (calculated)
0.022
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.