Factsheet for GSMUA_Achr6P16250_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P13010_001
GSMUA_Achr1P23890_001
GSMUA_Achr2P09720_001
GSMUA_Achr8P10530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	GSMUA_Achr1P23890_001	AT1G32060.1	17947231
AT3G26650.1	GSMUA_Achr2P09720_001	AT1G32060.1	17947231
AT3G26650.1	GSMUA_Achr11P...	AT3G62410.1	17947231
AT3G26650.1	GSMUA_Achr11P...	AT3G62410.1	17947231
AT3G26650.1	GSMUA_Achr1P13010_001	AT3G62410.1	17947231
AT3G26650.1	GSMUA_Achr8P10530_001	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	63.93	89.17
Bra019797.1-P	Field mustard	plastid	77.85	85.46
CDX98028	Canola	plastid	77.85	85.46
CDY19412	Canola	plastid	77.85	85.46
AT3G26650.1	Thale cress	plastid	77.17	85.35
Bra025219.1-P	Field mustard	plastid	73.97	85.26
CDX83635	Canola	plastid	73.74	85.0
CDY13649	Canola	plastid	73.74	85.0
CDY28536	Canola	plastid	73.52	84.74
CDY26599	Canola	plastid	77.17	84.71
VIT_14s0068g00680.t01	Wine grape	plastid	78.08	84.65
CDY16038	Canola	plastid	76.71	84.21
Bra026948.1-P	Field mustard	plastid	76.71	84.21
Solyc04g009030.2.1	Tomato	plastid	76.71	84.21
KRG94751	Soybean	extracellular, nucleus	77.4	84.12
Zm00001d003429_P001	Maize	plastid	77.4	84.12
KRH06774	Soybean	nucleus	77.4	84.12
Os04t0459500-02	Rice	plastid	77.17	84.08
PGSC0003DMT400030050	Potato	cytosol	76.03	83.46
TraesCS2D01G322900.1	Wheat	plastid	76.26	83.29
TraesCS2B01G342200.1	Wheat	plastid	76.26	83.29
Bra032939.1-P	Field mustard	plastid	63.47	83.23
CDY48981	Canola	plastid	69.86	83.15
TraesCS2A01G344600.1	Wheat	golgi, plastid	76.03	83.04
HORVU0Hr1G004830.6	Barley	plastid	76.03	81.62
Solyc02g020940.2.1	Tomato	plastid	75.34	80.68
Zm00001d025607_P001	Maize	cytosol, plastid	68.26	80.38
KXG26468	Sorghum	plastid	76.03	79.67
Zm00001d025599_P001	Maize	plastid	72.6	78.91
Zm00001d025593_P001	Maize	plastid	71.46	77.67
AT1G12900.5	Thale cress	endoplasmic reticulum	77.85	77.32
KRH70104	Soybean	plastid	46.8	74.28
GSMUA_Achr11P...	Banana	mitochondrion	63.01	70.23
GSMUA_Achr11P...	Banana	plastid	65.07	63.05
GSMUA_Achr5P00240_001	Banana	cytosol	24.2	50.72
GSMUA_Achr11P...	Banana	cytosol	36.07	45.8
GSMUA_Achr9P02180_001	Banana	endoplasmic reticulum	37.9	45.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	36.99	45.13
GSMUA_Achr2P02600_001	Banana	cytosol	5.71	43.1
GSMUA_Achr5P25410_001	Banana	unclear	36.99	41.12
GSMUA_Achr11P...	Banana	plasma membrane	36.07	39.3
GSMUA_Achr7P03580_001	Banana	plastid	38.36	39.16
GSMUA_Achr8P33500_001	Banana	plastid	37.67	38.46
GSMUA_Achr2P02610_001	Banana	cytosol	6.16	35.06
GSMUA_Achr11P...	Banana	mitochondrion	32.42	33.97
GSMUA_Achr5P00230_001	Banana	plastid	13.01	25.91
GSMUA_Achr5P17220_001	Banana	extracellular	6.39	25.45
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	5.71	18.8

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr6G16250_001	EnsemblPlants:GSMUA_Achr6P16250_001	EnsemblPlants:GSMUA_Achr6T16250_001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M0T7H3	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000295A419	SEG:seg	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G16250_001]

Coordinates

chr6:+:10831187..10833662

Molecular Weight (calculated)

47512.2 Da

IEP (calculated)

9.284

GRAVY (calculated)

-0.076

Length

438 amino acids

Sequence
(BLAST)

001: MHHNLPSLPI FPAYKLSCCC CRRRRRCRFC SPALFQWLRR LSRRPMPVFS GKGFSDFSGL RSASCSIPLR KIHSSDDFLS TVAFRTAAES SSGGYRKGAA
101: EAKIKVAING FGRIGRNFLR CWHGRKDSPL DVVAINDTGG IKQASHLLKY DSTLGIFEAD VKPEGQSAIS VDGKVIKVVS NRNPLDLPWG ELGVDLVIEG
201: TGVFVDREGA GKHIQAGAKK VLITAPGKGD IPTYVVGVNA DTYNPDEPII SNASCTTNCL APFVKVLDQK FGIIKGTMTT THSYTGDQRL LDASHRDLRR
301: ARAAALNIVP TSTGAAKAVA LVLPSLKGKL NGIALRVPTP NVSVVDLVVQ VSKKTLAEEV NAAFRNAAEK ELNGILSVCD EPLVSVDFRC SDVSSTVDSS
401: LTMVMGDDMV KVIAWYDNEW GYSQRVVDLA DIVANQWK

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.