Factsheet for GSMUA_Achr10P12360_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P13010_001
GSMUA_Achr1P23890_001
GSMUA_Achr2P09720_001
GSMUA_Achr8P10530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	GSMUA_Achr1P23890_001	AT1G32060.1	17947231
AT3G26650.1	GSMUA_Achr2P09720_001	AT1G32060.1	17947231
AT3G26650.1	GSMUA_Achr11P...	AT3G62410.1	17947231
AT3G26650.1	GSMUA_Achr11P...	AT3G62410.1	17947231
AT3G26650.1	GSMUA_Achr1P13010_001	AT3G62410.1	17947231
AT3G26650.1	GSMUA_Achr8P10530_001	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0459500-02	Rice	plastid	85.67	66.92
KRG94751	Soybean	extracellular, nucleus	85.03	66.25
KRH06774	Soybean	nucleus	85.03	66.25
Zm00001d003429_P001	Maize	plastid	85.03	66.25
CDX98028	Canola	plastid	83.12	65.41
CDY19412	Canola	plastid	83.12	65.41
VIT_14s0068g00680.t01	Wine grape	plastid	84.08	65.35
Bra019797.1-P	Field mustard	plastid	82.8	65.16
CDY26599	Canola	plastid	82.8	65.16
AT3G26650.1	Thale cress	plastid	82.17	65.15
Bra026948.1-P	Field mustard	plastid	82.48	64.91
Bra025219.1-P	Field mustard	plastid	78.34	64.74
CDY16038	Canola	plastid	82.17	64.66
CDY13649	Canola	plastid	78.03	64.47
CDY28536	Canola	plastid	78.03	64.47
CDX83635	Canola	plastid	78.03	64.47
TraesCS2D01G322900.1	Wheat	plastid	82.17	64.34
TraesCS2B01G342200.1	Wheat	plastid	82.17	64.34
TraesCS2A01G344600.1	Wheat	golgi, plastid	81.85	64.09
GSMUA_Achr6P16250_001	Banana	plastid	89.17	63.93
PGSC0003DMT400030050	Potato	cytosol	81.21	63.91
Solyc04g009030.2.1	Tomato	plastid	80.89	63.66
HORVU0Hr1G004830.6	Barley	plastid	81.85	62.99
KXG26468	Sorghum	plastid	83.44	62.68
CDY48981	Canola	plastid	72.29	61.68
Solyc02g020940.2.1	Tomato	plastid	79.3	60.88
Zm00001d025599_P001	Maize	plastid	77.71	60.55
Zm00001d025607_P001	Maize	cytosol, plastid	71.02	59.95
Zm00001d025593_P001	Maize	plastid	76.75	59.8
Bra032939.1-P	Field mustard	plastid	63.06	59.28
AT1G12900.5	Thale cress	endoplasmic reticulum	82.17	58.5
KRH70104	Soybean	plastid	51.27	58.33
GSMUA_Achr11P...	Banana	mitochondrion	64.65	51.65
GSMUA_Achr11P...	Banana	plastid	68.47	47.57
GSMUA_Achr11P...	Banana	cytosol	37.9	34.49
GSMUA_Achr9P02180_001	Banana	endoplasmic reticulum	40.13	34.43
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	38.85	33.98
GSMUA_Achr7P03580_001	Banana	plastid	43.95	32.17
GSMUA_Achr5P00240_001	Banana	cytosol	21.34	32.06
GSMUA_Achr8P33500_001	Banana	plastid	42.99	31.47
GSMUA_Achr2P02610_001	Banana	cytosol	7.64	31.17
GSMUA_Achr5P25410_001	Banana	unclear	38.85	30.96
GSMUA_Achr11P...	Banana	plasma membrane	37.9	29.6
GSMUA_Achr5P00230_001	Banana	plastid	19.11	27.27
GSMUA_Achr11P...	Banana	mitochondrion	34.08	25.6
GSMUA_Achr5P17220_001	Banana	extracellular	7.32	20.91
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	7.32	17.29
GSMUA_Achr2P02600_001	Banana	cytosol	3.18	17.24

Protein Annotations

MapMan:1.2.3	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G12360_001	EnsemblPlants:GSMUA_Achr10P12360_001	EnsemblPlants:GSMUA_Achr10T12360_001	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	UniProt:M0RHL2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0002964189	SEG:seg	:

Description

Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G12360_001]

Coordinates

chr10:-:21401072..21404493

Molecular Weight (calculated)

32969.6 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.046

Length

314 amino acids

Sequence
(BLAST)

001: MASATLTAAN ACLQGKGFSD FSGLRSASSS IPLRRINSSD DFLSVVAFRT SAVGSSGGYR KGAAEAKVKV AINGFGRIGR NFLRCWHGRK DSPLDVVAIN
101: DTGGVKQASH LLKYDSTLGI FEANVKPEGD SAISVDGKVI KVVSNRNPAN LPWGELGIDL VIEGTGVFVD REGAGKHIQA GAKKVLITAP GKGDIPTYVV
201: GVNEDAYNPD EPIISNASCT TNCLAPFVKI LDQKFGIIKG TMTTTHSYTG DQRLLDASHR DLRRARAAAL NIVPTSTGAA KAVALVLPSL KGKLNGIALR
301: VPTPNVSVML PTKN

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.