CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67892
CDX76635
CDY11420
CDY22582
CDY25110
CDY59208

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	CDY22582	AT1G32060.1	17947231
AT3G26650.1	CDY59208	AT1G32060.1	17947231
AT3G26650.1	CDX67892	AT3G62410.1	17947231
AT3G26650.1	CDX76635	AT3G62410.1	17947231
AT3G26650.1	CDY11420	AT3G62410.1	17947231
AT3G26650.1	CDY25110	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13649	Canola	plastid	98.68	98.68
CDX83635	Canola	plastid	97.89	97.89
CDY48981	Canola	plastid	92.63	95.65
AT3G26650.1	Thale cress	plastid	94.47	90.66
CDY19412	Canola	plastid	92.11	87.72
CDX98028	Canola	plastid	92.11	87.72
CDY26599	Canola	plastid	91.32	86.97
CDY16038	Canola	plastid	91.32	86.97
KRG94751	Soybean	extracellular, nucleus	87.89	82.88
KRH06774	Soybean	nucleus	87.63	82.63
VIT_14s0068g00680.t01	Wine grape	plastid	87.37	82.18
PGSC0003DMT400030050	Potato	cytosol	85.53	81.45
Os04t0459500-02	Rice	plastid	85.53	80.85
Zm00001d003429_P001	Maize	plastid	85.53	80.65
Solyc04g009030.2.1	Tomato	plastid	84.47	80.45
TraesCS2D01G322900.1	Wheat	plastid	84.21	79.8
TraesCS2B01G342200.1	Wheat	plastid	84.21	79.8
TraesCS2A01G344600.1	Wheat	golgi, plastid	83.95	79.55
HORVU0Hr1G004830.6	Barley	plastid	83.95	78.19
GSMUA_Achr10P...	Banana	plastid	64.47	78.03
KXG26468	Sorghum	plastid	84.47	76.79
Solyc02g020940.2.1	Tomato	plastid	82.63	76.77
Zm00001d025607_P001	Maize	cytosol, plastid	74.47	76.08
Zm00001d025599_P001	Maize	plastid	80.0	75.43
Zm00001d025593_P001	Maize	plastid	79.47	74.94
GSMUA_Achr6P16250_001	Banana	plastid	84.74	73.52
KRH70104	Soybean	plastid	50.79	69.93
CDY69523	Canola	cytosol	70.26	66.42
CDY35800	Canola	plastid	73.16	62.05
CDY49358	Canola	cytosol, mitochondrion	38.95	44.05
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	38.95	42.53
CDY42906	Canola	cytosol	39.21	42.21
CDX74199	Canola	endoplasmic reticulum	38.95	42.05
CDY25342	Canola	plastid	44.21	40.48
CDY22281	Canola	plastid	44.47	40.33
CDY50169	Canola	cytosol	39.47	40.32
CDY21098	Canola	cytosol	39.47	40.21
CDX79324	Canola	plastid	43.16	38.95
CDX67990	Canola	plastid	43.16	38.95
CDY35080	Canola	plastid	43.16	38.5
CDX98100	Canola	cytosol, mitochondrion, peroxisome	32.11	38.36
CDY33343	Canola	plastid	42.89	38.26
CDY30032	Canola	cytosol	39.47	38.17
CDY26651	Canola	mitochondrion, peroxisome	31.84	36.34
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	32.11	35.78
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	38.95	34.42
CDY29987	Canola	cytosol, peroxisome, plastid	31.84	32.18

Protein Annotations

MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078GSS0	UniProt:A0A078GSS0	EnsemblPlants:CDY28536
ProteinID:CDY28536	ProteinID:CDY28536.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00040460001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
UniParc:UPI0004EED755	SEG:seg	:	:	:	:

Description

BnaC02g36240DBnaC02g36240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSS0]

Coordinates

chrLK032221:-:483883..486352

Molecular Weight (calculated)

40889.8 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.030

Length

380 amino acids

Sequence
(BLAST)

001: MASATFSVPK PSLQGFTEFS GLRSSSASLP FGKKLSSDEF VSAITFQTSA MGSSGGYRKG VTEAKLKVAI NGFGRIGRNF LRCWHGRKDS PFDVIAINDT
101: GGVKQASHLL KYDSTLGIFD ADVKPSGDAA LSVDGKIIKV VSNRNPSLLP WKELGIDIVI EGTGVFVDRE GDIPTYVVGV NADAYNPDEP IISNASCTTN
201: CLAPFVKVLD QKFGIIKGTM TTTHSYTGDQ RLLDASHRDL RRARAAALNI VPTSTGAAKA VALVLPNLKG KLNGIALRVP TPNVSVVDLV VQVTKKTFAE
301: EINAAFRDSA EKELKGILEV CDEPLVSVDF RCSDVSSTID SSLTMVMGDD MVKVIAWYDN EWGYSQRVVD LADIVANNWK

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.