Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY43716 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49358 | Canola | cytosol, mitochondrion | 75.58 | 96.73 |
| AT3G04120.1 | Thale cress | cytosol | 75.81 | 96.45 |
| AT1G13440.1 | Thale cress | cytosol | 75.58 | 96.15 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 76.74 | 94.83 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 69.07 | 93.4 |
| CDX74199 | Canola | endoplasmic reticulum | 76.05 | 92.9 |
| CDY50169 | Canola | cytosol | 80.23 | 92.74 |
| CDY26651 | Canola | mitochondrion, peroxisome | 71.63 | 92.49 |
| CDY21098 | Canola | cytosol | 80.0 | 92.23 |
| CDY42906 | Canola | cytosol | 75.58 | 92.07 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 71.63 | 91.12 |
| PGSC0003DMT400044944 | Potato | extracellular | 71.63 | 91.12 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 71.16 | 90.0 |
| KRH31426 | Soybean | endoplasmic reticulum | 70.93 | 89.71 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 69.53 | 88.72 |
| Os04t0486600-01 | Rice | plastid | 69.3 | 88.43 |
| TraesCS7B01G213300.1 | Wheat | golgi | 69.3 | 88.43 |
| TraesCS7D01G309500.1 | Wheat | cytosol | 69.3 | 88.43 |
| Os02t0601300-01 | Rice | plasma membrane | 68.84 | 87.83 |
| CDY30032 | Canola | cytosol | 80.23 | 87.79 |
| KXG24320 | Sorghum | cytosol | 68.6 | 87.54 |
| KRH63724 | Soybean | nucleus | 68.6 | 87.28 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 68.37 | 86.98 |
| KXG20851 | Sorghum | cytosol | 68.14 | 86.94 |
| EES05377 | Sorghum | cytosol | 68.14 | 86.94 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 68.14 | 86.69 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 68.14 | 86.69 |
| Zm00001d051001_P002 | Maize | cytosol | 67.91 | 86.65 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 67.91 | 86.65 |
| TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 67.44 | 86.05 |
| TraesCS6A01G213700.1 | Wheat | unclear | 67.21 | 85.76 |
| Os08t0126300-01 | Rice | cytosol | 66.98 | 85.46 |
| KXG21112 | Sorghum | cytosol | 66.74 | 85.16 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 67.44 | 85.04 |
| OQU77090 | Sorghum | cytosol | 43.49 | 84.23 |
| TraesCS7A01G313100.1 | Wheat | cytosol | 66.98 | 83.48 |
| Zm00001d035156_P003 | Maize | cytosol | 67.67 | 83.38 |
| TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 67.67 | 81.28 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 67.44 | 79.67 |
| TraesCS7B01G234400.1 | Wheat | cytosol | 63.26 | 79.3 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 67.44 | 77.13 |
| PGSC0003DMT400044945 | Potato | cytosol | 31.63 | 76.84 |
| HORVU7Hr1G074690.3 | Barley | extracellular, plasma membrane | 70.0 | 76.59 |
| GSMUA_Achr2P02600_001 | Banana | cytosol | 8.84 | 65.52 |
| GSMUA_Achr2P02610_001 | Banana | cytosol | 11.16 | 62.34 |
| CDY25342 | Canola | plastid | 56.51 | 58.55 |
| Zm00001d017121_P001 | Maize | plastid | 68.84 | 58.04 |
| CDY22281 | Canola | plastid | 56.51 | 58.0 |
| CDX67990 | Canola | plastid | 56.51 | 57.72 |
| CDX79324 | Canola | plastid | 56.28 | 57.48 |
| CDY33343 | Canola | plastid | 56.05 | 56.57 |
| CDY35080 | Canola | plastid | 56.05 | 56.57 |
| KRH37937 | Soybean | plastid | 10.23 | 50.0 |
| CDY69523 | Canola | cytosol | 37.44 | 40.05 |
| CDY19412 | Canola | plastid | 36.74 | 39.6 |
| CDX98028 | Canola | plastid | 36.74 | 39.6 |
| CDY16038 | Canola | plastid | 36.28 | 39.1 |
| CDX83635 | Canola | plastid | 34.42 | 38.95 |
| CDY28536 | Canola | plastid | 34.42 | 38.95 |
| CDY26599 | Canola | plastid | 36.05 | 38.85 |
| CDY13649 | Canola | plastid | 33.95 | 38.42 |
| CDY48981 | Canola | plastid | 32.09 | 37.5 |
| CDY35800 | Canola | plastid | 38.14 | 36.61 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:A0A078FNT0 |
| UniProt:A0A078FNT0 | EnsemblPlants:CDY16090 | ProteinID:CDY16090 | ProteinID:CDY16090.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00090500001 |
| InterPro:GlycerAld/Erythrose_P_DH | InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00044 | PFAM:PF02800 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF63 |
| MetaCyc:PWY-1042 | MetaCyc:PWY-5484 | MetaCyc:PWY-6901 | MetaCyc:PWY-7003 | SMART:SM00846 | SUPFAM:SSF51735 |
| SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | UniPathway:UPA00109 | UniParc:UPI0004EEFAFC | SEG:seg | : |
Description
BnaC08g40330DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078FNT0]
Coordinates
chrLK032060:-:554733..557232
Molecular Weight (calculated)
47556.0 Da
IEP (calculated)
7.160
GRAVY (calculated)
-0.083
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFHFSTAF NSSYSIPFLI HQLPPECLYN AFHVQTKLSK WSTYVSQYEV DLINIEHQII KKSFHTKLSH SLTIFFTLDL ALSFSSSSPI SEMADKKIRI
101: GINGFGRIGR LVARVILQRN DVELVAVNDP FITTEYMTYM FKYDSVHGQW KHNELKLKDE KTLLFGEKPV TVFGIRNPED IPWGEAGADF VVESTGVFTD
201: KDKAAAHLKG GAKKVVISAP SKDAPMFVVG VNEHEYKSDL NIVSNASCTT NCLAPLAKVI NDRFGIVEGL MTTVHSITAT QKTVDGPSMK DWRGGRAASF
301: NIIPSSTGAA KAVGKVLPQL NGKLTGMSFR VPTVDVSVVD LTVRLEKAAT YDDIKKAIKE ESEGKLKGIL GYTEDDVVST DFVGDSRSSI FDAKAGIALS
401: DNFVKLVSWY DNEWGYSTRV VDLIIHMSKA
101: GINGFGRIGR LVARVILQRN DVELVAVNDP FITTEYMTYM FKYDSVHGQW KHNELKLKDE KTLLFGEKPV TVFGIRNPED IPWGEAGADF VVESTGVFTD
201: KDKAAAHLKG GAKKVVISAP SKDAPMFVVG VNEHEYKSDL NIVSNASCTT NCLAPLAKVI NDRFGIVEGL MTTVHSITAT QKTVDGPSMK DWRGGRAASF
301: NIIPSSTGAA KAVGKVLPQL NGKLTGMSFR VPTVDVSVVD LTVRLEKAAT YDDIKKAIKE ESEGKLKGIL GYTEDDVVST DFVGDSRSSI FDAKAGIALS
401: DNFVKLVSWY DNEWGYSTRV VDLIIHMSKA
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.