CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

plastid 1
peroxisome 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY43716	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98100	Canola	cytosol, mitochondrion, peroxisome	90.09	94.34
Bra026904.1-P	Field mustard	cytosol	87.99	86.69
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	87.39	85.34
CDY49358	Canola	cytosol, mitochondrion	84.98	84.23
AT3G04120.1	Thale cress	cytosol	84.98	83.73
AT1G13440.1	Thale cress	cytosol	84.68	83.43
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	85.89	82.18
CDX74199	Canola	endoplasmic reticulum	85.29	80.68
CDY42906	Canola	cytosol	84.98	80.17
PGSC0003DMT400044944	Potato	extracellular	80.78	79.59
Solyc05g014470.2.1	Tomato	extracellular, plastid	80.48	79.29
CDY50169	Canola	cytosol	87.99	78.76
CDY21098	Canola	cytosol	87.99	78.55
CDY29987	Canola	cytosol, peroxisome, plastid	87.69	77.66
KRG97466	Soybean	endoplasmic reticulum, nucleus	78.98	77.35
KRH31426	Soybean	endoplasmic reticulum	78.68	77.06
Os04t0486600-01	Rice	plastid	77.48	76.56
VIT_17s0000g10430.t01	Wine grape	extracellular	77.48	76.56
CDY30032	Canola	cytosol	89.79	76.08
OQU77090	Sorghum	cytosol	50.45	75.68
TraesCS7B01G213300.1	Wheat	golgi	76.58	75.67
TraesCS7D01G309500.1	Wheat	cytosol	76.58	75.67
KRH63724	Soybean	nucleus	76.58	75.44
Os02t0601300-01	Rice	plasma membrane	76.28	75.37
KRH63725	Soybean	endoplasmic reticulum, nucleus	76.28	75.15
KRH54227	Soybean	endoplasmic reticulum, nucleus	75.98	74.85
KRH54234	Soybean	endoplasmic reticulum, nucleus	75.98	74.85
KXG24320	Sorghum	cytosol	75.68	74.78
EES05377	Sorghum	cytosol	75.38	74.48
TraesCS6D01G196300.2	Wheat	golgi, nucleus	75.08	74.18
KXG20851	Sorghum	cytosol	75.08	74.18
Zm00001d049641_P001	Maize	plasma membrane, plastid	74.77	73.89
TraesCS6A01G213700.1	Wheat	unclear	74.77	73.89
Zm00001d051001_P002	Maize	cytosol	74.77	73.89
Os08t0126300-01	Rice	cytosol	74.17	73.29
PGSC0003DMT400044945	Potato	cytosol	38.74	72.88
KXG21112	Sorghum	cytosol	73.57	72.7
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	92.49	71.63
Zm00001d035156_P003	Maize	cytosol	74.47	71.06
TraesCS7A01G313100.1	Wheat	cytosol	73.57	71.01
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	76.28	70.95
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	75.08	68.68
TraesCS7B01G234400.1	Wheat	cytosol	70.27	68.22
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	78.38	66.41
GSMUA_Achr2P02600_001	Banana	cytosol	9.61	55.17
GSMUA_Achr2P02610_001	Banana	cytosol	12.31	53.25
Zm00001d017121_P001	Maize	plastid	76.58	50.0
CDY25342	Canola	plastid	62.16	49.88
CDY22281	Canola	plastid	62.16	49.4
CDX67990	Canola	plastid	62.16	49.17
CDX79324	Canola	plastid	61.86	48.93
CDY33343	Canola	plastid	61.56	48.12
CDY35080	Canola	plastid	61.56	48.12
KRH37937	Soybean	plastid	11.11	42.05
CDY69523	Canola	cytosol	39.94	33.08
CDY19412	Canola	plastid	39.64	33.08
CDX98028	Canola	plastid	39.64	33.08
CDY16038	Canola	plastid	39.04	32.58
CDY26599	Canola	plastid	38.74	32.33
CDY28536	Canola	plastid	36.34	31.84
CDX83635	Canola	plastid	36.34	31.84
CDY13649	Canola	plastid	35.74	31.32
CDY48981	Canola	plastid	33.63	30.43
CDY35800	Canola	plastid	40.84	30.36

Protein Annotations

Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:50.1.2	GO:A0A078GMV3	UniProt:A0A078GMV3	EnsemblPlants:CDY26651
ProteinID:CDY26651	ProteinID:CDY26651.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016620	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00035531001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
UniParc:UPI0004EED0FC	SEG:seg	:	:	:	:

Description

BnaA09g46260DBnaA09g46260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMV3]

Coordinates

chrLK032192:-:497110..499508

Molecular Weight (calculated)

37061.5 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.161

Length

333 amino acids

Sequence
(BLAST)

001: MRKLRGLEGD YWQKPRVIPF LTIFTFELAF SLSSSPISEM ADKKIKIGIN GFGRIGRLVA RVILQRNDVE LVAVNDPFIT TEYMTYMFKY DSVHGQWKHN
101: ELKLKDEKTL LFGEKPVTVF GIRNPEDIPW GEAGADFVVE STGVFTDKDK AAAHLKGGAK KVVISAPSKD APMFVVGVNE HEYKSDLDIV SNASCTTNCL
201: APLAKVINDR FGIVEGLMTT VHSITATQKT VDGPSMKDWR VVDLTVRLEK AATYDDIKKA IKEESEGKLK GILGYTEDDV VSTDFVGDSR SSIFDAKAGI
301: ALSDNFVKLV SWYDNEWGYS TRVVDLIIHM SKA

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.