Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY43716 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT1G13440.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
| AT3G04120.1 | CDY43716 | AT2G36460.1 | 23316205 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016729.1-P | Field mustard | cytosol | 90.86 | 99.7 |
| CDY21098 | Canola | cytosol | 97.58 | 97.32 |
| AT3G04120.1 | Thale cress | cytosol | 87.9 | 96.75 |
| CDY49358 | Canola | cytosol, mitochondrion | 87.37 | 96.73 |
| AT1G13440.1 | Thale cress | cytosol | 87.37 | 96.15 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 88.44 | 94.54 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 79.84 | 93.4 |
| CDX74199 | Canola | endoplasmic reticulum | 87.9 | 92.9 |
| CDY42906 | Canola | cytosol | 87.63 | 92.35 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 82.26 | 90.53 |
| PGSC0003DMT400044944 | Potato | extracellular | 82.26 | 90.53 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 82.53 | 90.29 |
| KRH31426 | Soybean | endoplasmic reticulum | 81.99 | 89.71 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 81.18 | 89.61 |
| Os04t0486600-01 | Rice | plastid | 80.91 | 89.32 |
| CDY30032 | Canola | cytosol | 93.55 | 88.55 |
| Os02t0601300-01 | Rice | plasma membrane | 79.84 | 88.13 |
| TraesCS7D01G309500.1 | Wheat | cytosol | 79.84 | 88.13 |
| TraesCS7B01G213300.1 | Wheat | golgi | 79.84 | 88.13 |
| CDY26651 | Canola | mitochondrion, peroxisome | 78.76 | 87.99 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 79.84 | 87.87 |
| KRH63724 | Soybean | nucleus | 79.84 | 87.87 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 79.57 | 87.57 |
| EES05377 | Sorghum | cytosol | 79.3 | 87.54 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 79.3 | 87.28 |
| KXG24320 | Sorghum | cytosol | 79.03 | 87.24 |
| Zm00001d051001_P002 | Maize | cytosol | 79.03 | 87.24 |
| TraesCS6D01G196300.2 | Wheat | golgi, nucleus | 78.76 | 86.94 |
| TraesCS6A01G213700.1 | Wheat | unclear | 78.49 | 86.65 |
| KXG20851 | Sorghum | cytosol | 78.49 | 86.65 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 78.23 | 86.35 |
| KXG21112 | Sorghum | cytosol | 78.23 | 86.35 |
| Os08t0126300-01 | Rice | cytosol | 77.96 | 86.05 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 78.23 | 85.34 |
| OQU77090 | Sorghum | cytosol | 50.27 | 84.23 |
| Zm00001d035156_P003 | Maize | cytosol | 78.49 | 83.67 |
| TraesCS7A01G313100.1 | Wheat | cytosol | 77.15 | 83.19 |
| TraesCS6B01G243700.1 | Wheat | endoplasmic reticulum | 79.3 | 82.4 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 92.74 | 80.23 |
| TraesCS7B01G234400.1 | Wheat | cytosol | 73.92 | 80.17 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 78.23 | 79.95 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 78.76 | 77.93 |
| HORVU7Hr1G074690.3 | Barley | extracellular, plasma membrane | 80.91 | 76.59 |
| PGSC0003DMT400044945 | Potato | cytosol | 36.29 | 76.27 |
| GSMUA_Achr2P02600_001 | Banana | cytosol | 9.95 | 63.79 |
| GSMUA_Achr2P02610_001 | Banana | cytosol | 12.9 | 62.34 |
| CDY25342 | Canola | plastid | 65.32 | 58.55 |
| CDY22281 | Canola | plastid | 65.32 | 58.0 |
| Zm00001d017121_P001 | Maize | plastid | 79.3 | 57.84 |
| CDX67990 | Canola | plastid | 65.32 | 57.72 |
| CDX79324 | Canola | plastid | 65.05 | 57.48 |
| CDY33343 | Canola | plastid | 64.78 | 56.57 |
| CDY35080 | Canola | plastid | 64.78 | 56.57 |
| KRH37937 | Soybean | plastid | 11.56 | 48.86 |
| CDY69523 | Canola | cytosol | 43.55 | 40.3 |
| CDY19412 | Canola | plastid | 43.01 | 40.1 |
| CDX98028 | Canola | plastid | 43.01 | 40.1 |
| CDY16038 | Canola | plastid | 42.47 | 39.6 |
| CDY28536 | Canola | plastid | 40.32 | 39.47 |
| CDX83635 | Canola | plastid | 40.32 | 39.47 |
| CDY26599 | Canola | plastid | 42.2 | 39.35 |
| CDY13649 | Canola | plastid | 39.78 | 38.95 |
| CDY48981 | Canola | plastid | 37.63 | 38.04 |
| CDY35800 | Canola | plastid | 44.35 | 36.83 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:A0A078ILF4 |
| UniProt:A0A078ILF4 | EnsemblPlants:CDY50169 | ProteinID:CDY50169 | ProteinID:CDY50169.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00096086001 |
| InterPro:GlycerAld/Erythrose_P_DH | InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf |
| PFAM:PF00044 | PFAM:PF02800 | PIRSF:PIRSF000149 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 |
| PANTHER:PTHR10836:SF63 | MetaCyc:PWY-1042 | MetaCyc:PWY-5484 | MetaCyc:PWY-6901 | MetaCyc:PWY-7003 | SMART:SM00846 |
| SUPFAM:SSF51735 | SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | UniPathway:UPA00109 | UniParc:UPI0004EEA785 | SEG:seg |
Description
BnaC08g15900DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078ILF4]
Coordinates
chrLK032886:+:24441..27094
Molecular Weight (calculated)
40770.0 Da
IEP (calculated)
7.633
GRAVY (calculated)
-0.089
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVSKTCCP HQTLHSLDYF HIRSLAFSLD LIAMADNKKI KIGINGFGRI GRLVARVILQ RNDVELVAVN DPFITTEYMT YMFKYDSVHG QWKHNELKIK
101: DEKTLLFGEK PVTVFGIRNP EEIPWGEAGA DFVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEHEYKS DLNIVSNASC TTNCLAPLAK
201: VINDRFGIVE GLMTTVHSIT ATQKTVDGPS MKDWRGGRAA SFNIIPSSTG AAKAVGKVLP QLNGKLTGMS FRVPTVDVSV VDLTVRLEKA ATYDEIKKAI
301: KEESEGKLKG ILGYTEDDVV STDFVGDNRS SIFDAKAGIA LSDNFVKLVS WYDNEWGYST RVVDLIIHMS KA
101: DEKTLLFGEK PVTVFGIRNP EEIPWGEAGA DFVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEHEYKS DLNIVSNASC TTNCLAPLAK
201: VINDRFGIVE GLMTTVHSIT ATQKTVDGPS MKDWRGGRAA SFNIIPSSTG AAKAVGKVLP QLNGKLTGMS FRVPTVDVSV VDLTVRLEKA ATYDEIKKAI
301: KEESEGKLKG ILGYTEDDVV STDFVGDNRS SIFDAKAGIA LSDNFVKLVS WYDNEWGYST RVVDLIIHMS KA
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.