Factsheet for Bra016729.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017233.1-P	cytosol, cytosol, mitochondrion
Bra017234.1-P	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Bra017233.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017234.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017233.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017234.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017233.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017234.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017233.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017234.1-P	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019722.1-P	Field mustard	cytosol	86.14	99.32
Bra026904.1-P	Field mustard	cytosol	98.23	98.52
AT3G04120.1	Thale cress	cytosol	96.17	96.45
Bra040213.1-P	Field mustard	cytosol	96.17	96.45
AT1G13440.1	Thale cress	cytosol	95.87	96.15
Bra040146.1-P	Field mustard	cytosol	95.28	95.56
CDY50169	Canola	cytosol	99.7	90.86
CDY21098	Canola	cytosol	99.7	90.62
Solyc05g014470.2.1	Tomato	extracellular, plastid	90.27	90.53
PGSC0003DMT400044944	Potato	extracellular	90.27	90.53
KRG97466	Soybean	endoplasmic reticulum, nucleus	90.56	90.29
KRH31426	Soybean	endoplasmic reticulum	90.27	90.0
VIT_17s0000g10430.t01	Wine grape	extracellular	89.09	89.61
Os04t0486600-01	Rice	plastid	88.79	89.32
TraesCS7B01G213300.1	Wheat	golgi	87.91	88.43
TraesCS7D01G309500.1	Wheat	cytosol	87.91	88.43
Os02t0601300-01	Rice	plasma membrane	87.61	88.13
KRH63724	Soybean	nucleus	87.61	87.87
KRH54234	Soybean	endoplasmic reticulum, nucleus	87.61	87.87
KRH63725	Soybean	endoplasmic reticulum, nucleus	87.32	87.57
EES05377	Sorghum	cytosol	87.02	87.54
KXG24320	Sorghum	cytosol	87.02	87.54
KRH54227	Soybean	endoplasmic reticulum, nucleus	87.02	87.28
Zm00001d051001_P002	Maize	cytosol	86.73	87.24
TraesCS6D01G196300.2	Wheat	golgi, nucleus	86.43	86.94
KXG20851	Sorghum	cytosol	86.43	86.94
Zm00001d049641_P001	Maize	plasma membrane, plastid	86.14	86.65
TraesCS6A01G213700.1	Wheat	unclear	86.14	86.65
KXG21112	Sorghum	cytosol	85.84	86.35
Os08t0126300-01	Rice	cytosol	85.25	85.76
OQU77090	Sorghum	cytosol	55.46	84.68
Zm00001d035156_P003	Maize	cytosol	86.43	83.95
TraesCS7A01G313100.1	Wheat	cytosol	84.96	83.48
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	86.43	81.84
TraesCS7B01G234400.1	Wheat	cytosol	81.12	80.17
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	85.84	79.95
PGSC0003DMT400044945	Potato	cytosol	39.82	76.27
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	87.91	75.83
GSMUA_Achr2P02600_001	Banana	cytosol	10.91	63.79
GSMUA_Achr2P02610_001	Banana	cytosol	14.16	62.34
Bra008416.1-P	Field mustard	plastid	71.39	58.31
Zm00001d017121_P001	Maize	plastid	86.73	57.65
Bra026068.1-P	Field mustard	plastid	71.39	57.08
Bra003606.1-P	Field mustard	plastid	71.39	56.67
KRH37937	Soybean	plastid	12.68	48.86
Bra019797.1-P	Field mustard	plastid	47.2	40.1
Bra025219.1-P	Field mustard	plastid	44.25	39.47
Bra026948.1-P	Field mustard	plastid	46.31	39.35
Bra032939.1-P	Field mustard	plastid	37.17	37.72
Bra034927.1-P	Field mustard	plastid	48.38	36.61

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	ProteinID:AAN05699
ProteinID:AAN05699.1	EMBL:AF536826	EnsemblPlantsGene:Bra016729	EnsemblPlants:Bra016729.1	EnsemblPlants:Bra016729.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M4DJQ1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534
UniParc:UPI0002545E63	SEG:seg	:	:	:	:

Description

AT3G04120 (E=5e-177) GAPC, GAPC-1, GAPC1 | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase

Coordinates

chrA08:+:19693395..19695423

Molecular Weight (calculated)

37069.5 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.146

Length

339 amino acids

Sequence
(BLAST)

001: MADNKKIKIG INGFGRIGRL VARVILQRND VELVAVNDPF ITTEYMTYMF KYDSVHGQWK HNELKLKDEK TLLFGEKPVT VFGIRNPEEI PWGEAGADFV
101: VESTGVFTDK DKAAAHLKGG AKKVVISAPS KDAPMFVVGV NEHEYKSDLN IVSNASCTTN CLAPLAKVIN DRFGIVEGLM TTVHSITATQ KTVDGPSMKD
201: WRGGRAASFN IIPSSTGAAK AVGKVLPQLN GKLTGMSFRV PTVDVSVVDL TVRLEKAATY DEIKKAIKEE SEGKLKGILG YTEDDVVSTD FVGDNRSSIF
301: DAKAGIALSD NFVKLVSWYD NEWGYSTRVV DLIIHMSKA

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.