Factsheet for HORVU6Hr1G054520.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G088500.2	cytosol, cytosol, mitochondrion
HORVU3Hr1G088540.1	cytosol, cytosol, mitochondrion
HORVU3Hr1G088570.1	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	HORVU3Hr1G088500.2	AT2G36460.1	23316205
AT1G13440.1	HORVU3Hr1G088540.1	AT2G36460.1	23316205
AT1G13440.1	HORVU3Hr1G088570.1	AT2G36460.1	23316205
AT1G13440.1	HORVU3Hr1G088500.2	AT2G36460.1	23316205
AT1G13440.1	HORVU3Hr1G088540.1	AT2G36460.1	23316205
AT1G13440.1	HORVU3Hr1G088570.1	AT2G36460.1	23316205
AT3G04120.1	HORVU3Hr1G088500.2	AT2G36460.1	23316205
AT3G04120.1	HORVU3Hr1G088540.1	AT2G36460.1	23316205
AT3G04120.1	HORVU3Hr1G088570.1	AT2G36460.1	23316205
AT3G04120.1	HORVU3Hr1G088500.2	AT2G36460.1	23316205
AT3G04120.1	HORVU3Hr1G088540.1	AT2G36460.1	23316205
AT3G04120.1	HORVU3Hr1G088570.1	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G196300.2	Wheat	golgi, nucleus	91.76	99.11
TraesCS6A01G213700.1	Wheat	unclear	91.21	98.52
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	91.76	93.3
Os02t0601300-01	Rice	plasma membrane	85.71	92.58
Zm00001d051001_P002	Maize	cytosol	84.89	91.69
EES05377	Sorghum	cytosol	84.62	91.39
TraesCS7B01G234400.1	Wheat	cytosol	84.62	89.8
KXG21112	Sorghum	cytosol	82.42	89.02
VIT_01s0010g02460.t01	Wine grape	cytosol	82.42	88.24
KRG97466	Soybean	endoplasmic reticulum, nucleus	81.59	87.35
KRH31426	Soybean	endoplasmic reticulum	81.32	87.06
Solyc03g111010.2.1	Tomato	plastid	80.49	86.94
PGSC0003DMT400039449	Potato	extracellular	80.49	86.94
CDY49358	Canola	cytosol, mitochondrion	80.22	86.9
Bra040213.1-P	Field mustard	cytosol	80.49	86.69
GSMUA_Achr11P...	Banana	cytosol	82.14	86.67
Bra040146.1-P	Field mustard	cytosol	80.22	86.39
Solyc06g071920.2.1	Tomato	nucleus	79.95	86.35
VIT_17s0000g10430.t01	Wine grape	extracellular	79.95	86.35
PGSC0003DMT400044944	Potato	extracellular	79.95	86.09
Bra026904.1-P	Field mustard	cytosol	79.95	86.09
Bra016729.1-P	Field mustard	cytosol	79.95	85.84
Solyc05g014470.2.1	Tomato	extracellular, plastid	79.67	85.8
AT3G04120.1	Thale cress	cytosol	79.67	85.8
PGSC0003DMT400069357	Potato	cytosol	79.4	85.76
AT1G13440.1	Thale cress	cytosol	79.4	85.5
Bra019722.1-P	Field mustard	cytosol	68.41	84.69
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	80.49	84.2
KRH63725	Soybean	endoplasmic reticulum, nucleus	77.75	83.73
KRH63724	Soybean	nucleus	77.75	83.73
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	82.42	83.57
KRH54227	Soybean	endoplasmic reticulum, nucleus	77.47	83.43
KRH54234	Soybean	endoplasmic reticulum, nucleus	77.47	83.43
CDY42906	Canola	cytosol	80.77	83.29
CDX74199	Canola	endoplasmic reticulum	79.95	82.67
CDX98100	Canola	cytosol, mitochondrion, peroxisome	68.41	78.3
CDY50169	Canola	cytosol	79.95	78.23
CDY21098	Canola	cytosol	79.95	78.02
CDY26651	Canola	mitochondrion, peroxisome	68.68	75.08
GSMUA_Achr11P...	Banana	plasma membrane	82.14	74.38
CDY30032	Canola	cytosol	79.95	74.05
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	69.23	73.9
HORVU2Hr1G123240.1	Barley	cytosol	7.69	73.68
HORVU2Hr1G123170.1	Barley	cytosol	7.69	73.68
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	79.4	73.54
PGSC0003DMT400044945	Potato	cytosol	35.16	72.32
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	79.67	67.44
CDY29987	Canola	cytosol, peroxisome, plastid	68.96	66.76
HORVU6Hr1G089870.1	Barley	cytosol	7.69	66.67
Zm00001d017121_P001	Maize	plastid	84.62	60.39
HORVU6Hr1G032070.2	Barley	plastid	64.29	56.25
KRH37937	Soybean	plastid	12.36	51.14
HORVU7Hr1G108580.4	Barley	plastid	57.42	50.98
HORVU0Hr1G004830.6	Barley	plastid	43.68	38.97
HORVU4Hr1G082700.4	Barley	plastid	44.78	36.71
HORVU3Hr1G092890.1	Barley	plastid	29.95	18.86

Protein Annotations

Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:50.1.2	UniProt:A0A287U800	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	EnsemblPlantsGene:HORVU6Hr1G054520	EnsemblPlants:HORVU6Hr1G054520.3	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF58
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI000B479A2F	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:+:344797286..344800082

Molecular Weight (calculated)

39790.8 Da

IEP (calculated)

8.346

GRAVY (calculated)

-0.083

Length

364 amino acids

Sequence
(BLAST)

001: MAPIKIGING FGRIGRLVAR VALQCPDVEL VAVNDPFITT DYMTYMFKYD TVHGQWKHHE VKVKDSKTLL FGEKEVAVFG CRFVTIYFGS HAVNFHGKLY
101: RLINKPLCRN PEEIPWAAAG AEYVVESTGV FTDKDKAAAH IKGGAKKVII SAPSKDAPMF VCGVNEKEYK SDIDIVSNAS CTTNCLAPLA KVINDRFGIV
201: EGLMTTVHAM TATQKTVDGP SSKDWRGGRA ASFNIIPSST GAAKAVGKVL PELNGKLTGM AFRVPTVDVS VVDLTVRLAK PATYEQIKAA IKEESEGNLK
301: GILGYVDEDL VSTDFQGDSR SSIFDAKAGI ALNDNFVKLV SWYDNEWGYS TRVVDLIRHM HSTK

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.