Factsheet for PGSC0003DMT400039449

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111010.2.1	Tomato	plastid	99.7	99.7
PGSC0003DMT400069357	Potato	cytosol	93.18	93.18
PGSC0003DMT400044944	Potato	extracellular	90.8	90.53
Os04t0486600-01	Rice	plastid	89.61	89.61
EES05377	Sorghum	cytosol	88.13	88.13
Zm00001d051001_P002	Maize	cytosol	87.54	87.54
TraesCS6D01G196300.2	Wheat	golgi, nucleus	87.54	87.54
Os02t0601300-01	Rice	plasma membrane	87.54	87.54
KXG21112	Sorghum	cytosol	87.24	87.24
TraesCS6A01G213700.1	Wheat	unclear	87.24	87.24
PGSC0003DMT400010575	Potato	cytosol	86.35	86.35
TraesCS7D01G309500.1	Wheat	cytosol	83.98	83.98
TraesCS7B01G213300.1	Wheat	golgi	83.98	83.98
KXG24320	Sorghum	cytosol	83.68	83.68
Os08t0126300-01	Rice	cytosol	83.09	83.09
KXG20851	Sorghum	cytosol	83.09	83.09
Zm00001d049641_P001	Maize	plasma membrane, plastid	82.79	82.79
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	87.54	82.4
PGSC0003DMT400044945	Potato	cytosol	43.03	81.92
OQU77090	Sorghum	cytosol	53.41	81.08
TraesCS7B01G234400.1	Wheat	cytosol	82.2	80.76
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	86.94	80.49
Zm00001d035156_P003	Maize	cytosol	83.09	80.23
TraesCS7A01G313100.1	Wheat	cytosol	81.01	79.13
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	83.98	72.01
PGSC0003DMT400029242	Potato	plastid	72.4	58.23
Zm00001d017121_P001	Maize	plastid	87.54	57.84
PGSC0003DMT400030050	Potato	cytosol	46.29	39.1
PGSC0003DMT400025881	Potato	plastid	49.26	36.89
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	48.96	36.67
PGSC0003DMT400087142	Potato	plastid	19.88	30.04

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:102592694	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720
ProteinID:AFX67011	ProteinID:AFX67011.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	EMBL:JX845304	UniProt:K7WNY2	InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_001275277.1
PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400015253	PGSC:PGSC0003DMG400015253	EnsemblPlants:PGSC0003DMT400039449	PIRSF:PIRSF000149
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF62	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0002949AB4	SEG:seg	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400015253]

Coordinates

chr3:+:50586141..50589501

Molecular Weight (calculated)

36726.1 Da

IEP (calculated)

7.653

GRAVY (calculated)

-0.081

Length

337 amino acids

Sequence
(BLAST)

001: MAKVKIGING FGRIGRLVAR VALQRDDVEL VAVNDPFISV DYMTYMFKYD SVHGQWKHHE LKVKDEKTLL FGEKAVTVFG FRNPEEIPWA QTGADYIVES
101: TGVFTDKDKA AAHLKGGAKK VIISAPSKDA PMFVVGVNEK EYKPELNIVS NASCTTNCLA PLAKVINDRF GIVEGLMTTV HSITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTVR LEKEATYDEI KAAIKEESEG KLKGILGYTE DDVVSTDFVG DNRSSIFDAK
301: AGIALSKNFV KLVAWYDNEW GYSTRVVDLI IHMSSVQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.