Factsheet for PGSC0003DMT400025881

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400025881
PGSC0003DMT400075608

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	PGSC0003DMT400025881	AT1G42970.1	21798944
AT1G42970.1	PGSC0003DMT400075608	AT1G42970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082630.2.1	Tomato	plastid	99.33	93.91
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	92.89	92.89
VIT_18s0122g00960.t01	Wine grape	plastid	90.67	90.07
KRH51576	Soybean	nucleus, plastid	90.0	89.4
GSMUA_Achr11P...	Banana	mitochondrion	78.0	89.31
KRH60895	Soybean	nucleus, plastid	89.33	89.14
CDY69523	Canola	cytosol	79.33	88.81
AT1G42970.1	Thale cress	plastid	86.44	87.02
CDY35800	Canola	plastid	86.22	86.61
Bra034927.1-P	Field mustard	plastid	86.22	86.61
GSMUA_Achr11P...	Banana	plastid	86.0	85.62
KXG40264	Sorghum	plastid	81.56	82.66
Os03t0129300-01	Rice	extracellular, plastid	80.89	81.98
TraesCS4D01G319400.1	Wheat	plastid	80.22	81.31
TraesCS4B01G323000.1	Wheat	plastid	80.0	81.08
HORVU4Hr1G082700.4	Barley	plastid	79.78	80.86
Zm00001d027488_P001	Maize	extracellular, plastid	80.67	80.85
TraesCS5A01G495100.1	Wheat	golgi, plastid	79.56	80.63
PGSC0003DMT400030050	Potato	cytosol	67.33	75.94
KRH74912	Soybean	cytosol	22.67	72.86
PGSC0003DMT400087142	Potato	plastid	28.0	56.5
PGSC0003DMT400039449	Potato	extracellular	36.89	49.26
PGSC0003DMT400044944	Potato	extracellular	36.22	48.22
PGSC0003DMT400069357	Potato	cytosol	35.33	47.18
PGSC0003DMT400010575	Potato	cytosol	34.67	46.29
PGSC0003DMT400029242	Potato	plastid	39.56	42.48
PGSC0003DMT400044945	Potato	cytosol	13.56	34.46

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M1AM94
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400009992	PGSC:PGSC0003DMG400009992	EnsemblPlants:PGSC0003DMT400025881
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000296CE16	SEG:seg	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase B subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400009992]

Coordinates

chr4:-:71825714..71828787

Molecular Weight (calculated)

48009.3 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.057

Length

450 amino acids

Sequence
(BLAST)

001: MASHAALASS RIPTSTRLPS NKNSYSFPTQ CLSKKFEVAE FSGLRSSGCV TFSNRESSFF DVVSAQLTPK TTGSAPVKGE TVAKLKVAIN GFGRIGRNFL
101: RCWHGRKDSP LDVVVVNDSG GVKNASHLLK YDSMLGTFKA DVKIVDNETI SVDGKHIKVV SSRDPLKLPW AELGIDIVIE GTGVFVDGPG AGKHIQAGAK
201: KVIITAPAKG ADIPTYVVGV NEQDYSHEIA NIISNASCTT NCLAPFVKVM DEELGIVKGT MTTTHSYTGD QRLLDASHRD LRRARAAALN IVPTSTGAAK
301: AVSLVLPQLK GKLNGIALRV PTPNVSVVDL VVNVEKKGIT AEDVNAAFRK AADGPLKGIL DVCDAPLVSV DFRCSDVSAT IDSSLTMVMG DDMVKVIAWY
401: DNEWGYSQRV VDLAHLVASK WPGVAAPGSG DPLDEFCETN PSDEECKVYE

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.