Factsheet for TraesCS4D01G319400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1
TraesCS4B01G323000.1
TraesCS4D01G319400.1
TraesCS5A01G495100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	TraesCS4B01G323000.1	AT1G42970.1	21798944
AT1G42970.1	TraesCS4D01G319400.1	AT1G42970.1	21798944
AT1G42970.1	TraesCS5A01G495100.1	AT1G42970.1	21798944
AT1G42970.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G42970.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G082700.4	Barley	plastid	99.32	99.32
TraesCS4B01G323000.1	Wheat	plastid	99.32	99.32
TraesCS5A01G495100.1	Wheat	golgi, plastid	99.1	99.1
Os03t0129300-01	Rice	extracellular, plastid	90.99	90.99
KXG40264	Sorghum	plastid	90.77	90.77
Zm00001d027488_P001	Maize	extracellular, plastid	89.64	88.64
CDY69523	Canola	cytosol	77.25	85.32
GSMUA_Achr11P...	Banana	mitochondrion	75.0	84.73
AT1G42970.1	Thale cress	plastid	82.66	82.1
Bra034927.1-P	Field mustard	plastid	82.21	81.47
CDY35800	Canola	plastid	82.21	81.47
VIT_18s0122g00960.t01	Wine grape	plastid	83.11	81.46
Solyc12g094640.1.1	Tomato	plastid	82.43	81.33
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	82.21	81.11
PGSC0003DMT400025881	Potato	plastid	81.31	80.22
KRH60895	Soybean	nucleus, plastid	81.31	80.04
KRH51576	Soybean	nucleus, plastid	81.08	79.47
GSMUA_Achr11P...	Banana	plastid	80.63	79.2
Solyc04g082630.2.1	Tomato	plastid	81.31	75.84
TraesCS2D01G322900.1	Wheat	plastid	65.09	72.07
KRH74912	Soybean	cytosol	22.52	71.43
TraesCS7D01G309500.1	Wheat	cytosol	36.94	48.66
TraesCS6D01G196300.2	Wheat	golgi, nucleus	36.71	48.37
TraesCS6D01G146900.1	Wheat	plastid	40.32	43.03
TraesCS7D01G465500.1	Wheat	plastid	40.32	41.44
TraesCS3D01G063600.1	Wheat	plastid	23.65	18.04

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009416	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009744	GO:GO:0009941	GO:GO:0010319
GO:GO:0016020	GO:GO:0016620	GO:GO:0046686	GO:GO:0048046	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	EnsemblPlantsGene:TraesCS4D01G319400
EnsemblPlants:TraesCS4D01G319400.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:483137131..483138993

Molecular Weight (calculated)

46860.8 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.008

Length

444 amino acids

Sequence
(BLAST)

001: MAAHAALAAT RIPTSARLHS KAASRQRVDF ADFSGLRPGS CSVSAAAREA SFSDVLGAQL VARASGENAV RAPAEAKLKV AINGFGRIGR NFLRCWHGRE
101: NSPLEVIVIN DSGGVRNASH LLKYDSMLGT FKADVKIVDN ETISVDGKNI QVVSNRDPLK LPWAELGIDI VIEGTGVFVD GPGAGKHLQA GAKKVIITAP
201: AKGADIPTYV VGVNEGDYGH EVANIISNAS CTTNCLAPFA KVLDEEFGIV KGTMTTTHSY TGDQRLLDAS HRDLRRARAA ALNIVPTSTG AAKAVSLVLP
301: QLKGKLNGIA LRVPTPNVSV VDLVINTVKT GITADDVNAA FRKAADGPLK GILDVCDEPL VSVDFRCSDV STSIDASLTM VMGDDMVKVV AWYDNEWGYS
401: QRVVDLAHLV AAKWPGAGTG GSGDPLEDYC KTDPNAVECK VFDE

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.