Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G231300.1 | Wheat | cytosol, mitochondrion | 98.84 | 98.84 |
| TraesCS3A01G221800.1 | Wheat | cytosol | 98.69 | 98.69 |
| HORVU3Hr1G054240.2 | Barley | cytosol, mitochondrion | 95.93 | 95.93 |
| EES01073 | Sorghum | cytosol | 82.12 | 82.97 |
| Zm00001d044479_P001 | Maize | cytosol | 81.83 | 82.67 |
| Zm00001d011352_P001 | Maize | cytosol | 80.23 | 81.06 |
| TraesCS1B01G462300.1 | Wheat | cytosol | 75.29 | 74.64 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 56.83 | 60.25 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 59.16 | 59.42 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 22.53 | 58.71 |
| TraesCS3B01G162100.1 | Wheat | cytosol | 56.1 | 57.44 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 41.57 | 56.86 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 56.25 | 54.35 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 54.22 | 53.82 |
| KRH21985 | Soybean | cytosol | 52.47 | 52.17 |
| KRH26223 | Soybean | nucleus | 51.02 | 51.92 |
| KRH55099 | Soybean | nucleus | 51.16 | 51.92 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 53.49 | 51.83 |
| KRH22291 | Soybean | plastid | 43.9 | 51.71 |
| KRH27330 | Soybean | cytosol | 52.03 | 51.29 |
| PGSC0003DMT400032362 | Potato | cytosol | 51.89 | 51.0 |
| Solyc07g062580.2.1 | Tomato | cytosol | 51.89 | 50.93 |
| Bra038116.1-P | Field mustard | cytosol | 48.69 | 50.91 |
| CDY25865 | Canola | cytosol | 48.69 | 50.91 |
| CDY25722 | Canola | cytosol, plastid | 49.27 | 50.82 |
| CDY02514 | Canola | cytosol, plastid | 49.13 | 50.45 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 49.13 | 50.45 |
| CDY45930 | Canola | cytosol | 48.26 | 50.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.33 | 49.63 |
| PGSC0003DMT400054803 | Potato | cytosol | 20.93 | 48.98 |
| Bra000267.1-P | Field mustard | cytosol | 46.95 | 48.07 |
| CDY61202 | Canola | cytosol | 46.8 | 47.99 |
| AT1G53300.1 | Thale cress | cytosol | 48.4 | 47.64 |
| CDY55390 | Canola | cytosol | 45.93 | 47.23 |
| AT3G58620.1 | Thale cress | cytosol | 46.66 | 47.07 |
| CDY51514 | Canola | cytosol | 45.64 | 46.94 |
| AT2G42580.1 | Thale cress | cytosol | 47.09 | 46.89 |
| CDY42827 | Canola | cytosol | 45.64 | 46.8 |
| Bra007405.1-P | Field mustard | cytosol | 45.49 | 46.51 |
| Bra004709.1-P | Field mustard | cytosol | 44.33 | 46.42 |
| CDY34224 | Canola | cytosol | 4.65 | 46.38 |
| CDX71941 | Canola | cytosol | 45.35 | 46.29 |
| CDY49237 | Canola | cytosol | 44.48 | 45.88 |
| PGSC0003DMT400054902 | Potato | cytosol | 19.62 | 45.15 |
| KRH27037 | Soybean | nucleus | 43.31 | 44.15 |
| Bra023795.1-P | Field mustard | cytosol | 5.52 | 43.18 |
| PGSC0003DMT400054904 | Potato | cytosol | 37.21 | 42.38 |
| Solyc10g007240.1.1 | Tomato | cytosol | 36.34 | 42.09 |
| PGSC0003DMT400054911 | Potato | cytosol | 31.83 | 42.03 |
| Solyc10g007230.1.1 | Tomato | cytosol | 35.76 | 41.28 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 36.77 | 41.14 |
| AT3G14950.1 | Thale cress | cytosol | 43.46 | 40.96 |
| Solyc10g007220.1.1 | Tomato | cytosol | 29.51 | 40.2 |
| Solyc10g007420.2.1 | Tomato | cytosol | 24.42 | 39.53 |
| PGSC0003DMT400054909 | Potato | cytosol | 23.4 | 39.08 |
| Bra027292.1-P | Field mustard | cytosol | 41.42 | 38.83 |
| CDX98517 | Canola | cytosol | 40.7 | 38.67 |
| CDX97619 | Canola | cytosol | 40.55 | 38.48 |
| CDY32327 | Canola | cytosol | 40.7 | 38.41 |
| CDY20095 | Canola | nucleus | 40.41 | 38.19 |
| CDY34222 | Canola | cytosol | 17.01 | 37.99 |
| CDY40820 | Canola | mitochondrion | 15.41 | 37.72 |
| Solyc10g007250.1.1 | Tomato | cytosol | 15.26 | 37.63 |
| Bra021583.1-P | Field mustard | nucleus | 41.13 | 37.43 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 20.06 | 36.51 |
| PGSC0003DMT400091014 | Potato | nucleus | 30.81 | 34.93 |
| CDY34223 | Canola | cytosol | 16.42 | 34.66 |
| Bra023793.1-P | Field mustard | cytosol | 20.64 | 34.47 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 15.99 | 33.74 |
| TraesCS6B01G330500.1 | Wheat | mitochondrion, plastid | 27.47 | 32.98 |
| TraesCS5B01G335700.1 | Wheat | cytosol | 8.43 | 25.33 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR013766 | InterPro:IPR019734 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF07719 | PFAM:PF13174 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF395 | SMART:SM00028 | SUPFAM:SSF48452 |
| SUPFAM:SSF52833 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_2 | InterPro:TPR_repeat |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS3B01G251600 | EnsemblPlants:TraesCS3B01G251600.1 | TIGR:cd02947 | SEG:seg |
Description
No Description!
Coordinates
chr3B:+:403905303..403908614
Molecular Weight (calculated)
73632.4 Da
IEP (calculated)
9.161
GRAVY (calculated)
-0.296
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEADRLRLR AAALALDGGA VRDKPDSKAN VFADLGSPVS PLRARASMTT SSSSSSGSAK SPAQSNVGAA GVAGGRSHSG ELAVESHPPR LPGHRRCGSG
101: PLIFSGGSSS GGSGGGGWDR GSTASSPMTN ALPAGNICPY GRVPGAAAAP PPPRSRPDVL GSGTGHYGHG SIMRGAGMAP ARSSIDAPSF LGHSMRSPAS
201: SPVAPSSGGS LQEMTRLGNE WYKKGRHGEA LRYYDRAVSL CPESAACRGN RAAALIGLGR LADALRDSEE AVRLDPASGR AHSRLAGLYL RLGMIEKARR
301: HFTQARHLHE SDPADWEKLQ DVEMHLGRST DARKIGDWKS ALREADAAIA AGADSSQLLR ALRSEALLRL HKLEEADSTL TSLLKLDKSL LSWTAAKLSG
401: MLVESYVHIV RAQVDMALGR FDAAVAAAEN ARLIDPGNAE VGMILNNVRL VARARAQGNE LFKAAKFSDA SIAYGEGLKY DPSNPVLHCN RAACWWKLDR
501: WEKAVDDCNE ALRIQPTYTK ALLRRAMSYS KLERWADCVR DYEVLRKELP ADTEVAEALF HAQVALKTTR GEDVSNMKFG GEVEMVTSVE QLYAATRSPG
601: VSVVYFMSSV NQQCIQITPA VDSLCSECPS MNFLKVNVED SPTVAKAENV RIVPTFKIYK DGARVKEMIC PTLHVLRYSV RHYAVSSS
101: PLIFSGGSSS GGSGGGGWDR GSTASSPMTN ALPAGNICPY GRVPGAAAAP PPPRSRPDVL GSGTGHYGHG SIMRGAGMAP ARSSIDAPSF LGHSMRSPAS
201: SPVAPSSGGS LQEMTRLGNE WYKKGRHGEA LRYYDRAVSL CPESAACRGN RAAALIGLGR LADALRDSEE AVRLDPASGR AHSRLAGLYL RLGMIEKARR
301: HFTQARHLHE SDPADWEKLQ DVEMHLGRST DARKIGDWKS ALREADAAIA AGADSSQLLR ALRSEALLRL HKLEEADSTL TSLLKLDKSL LSWTAAKLSG
401: MLVESYVHIV RAQVDMALGR FDAAVAAAEN ARLIDPGNAE VGMILNNVRL VARARAQGNE LFKAAKFSDA SIAYGEGLKY DPSNPVLHCN RAACWWKLDR
501: WEKAVDDCNE ALRIQPTYTK ALLRRAMSYS KLERWADCVR DYEVLRKELP ADTEVAEALF HAQVALKTTR GEDVSNMKFG GEVEMVTSVE QLYAATRSPG
601: VSVVYFMSSV NQQCIQITPA VDSLCSECPS MNFLKVNVED SPTVAKAENV RIVPTFKIYK DGARVKEMIC PTLHVLRYSV RHYAVSSS
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
Arabidopsis Description
TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.