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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, unclear, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, nucleus, unclear
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 golgi: 25769308
unclear: 25769308
nucleus: 26228564
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 26228564 doi
E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G24830.1 TraesCS1A01G427400.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS1B01G462300.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS1D01G437100.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS3A01G143000.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS3A01G221800.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS3B01G162100.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS3B01G251600.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS3D01G144600.1 AT2G42580.1 19000166
AT3G24830.1 TraesCS3D01G231300.1 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G402800.1 Wheat cytosol 100.0 100.0
TraesCS5B01G397800.1 Wheat cytosol 99.51 99.51
EER93429 Sorghum cytosol 92.23 92.23
EES17613 Sorghum mitochondrion 91.26 91.26
TraesCS2A01G260700.1 Wheat golgi, unclear 91.26 91.26
Zm00001d013252_P001 Maize plasma membrane 90.29 90.29
GSMUA_Achr6P15590_001 Banana mitochondrion 77.18 88.33
GSMUA_Achr10P... Banana mitochondrion 76.7 87.78
GSMUA_Achr3P17910_001 Banana mitochondrion 76.7 87.78
Os11t0425800-01 Rice mitochondrion 29.61 87.14
Solyc12g098330.1.1 Tomato nucleus, unclear 85.92 85.92
PGSC0003DMT400019917 Potato mitochondrion 85.92 85.92
PGSC0003DMT400076290 Potato cytosol, plastid 85.92 85.92
GSMUA_Achr6P23390_001 Banana cytosol 58.25 85.71
PGSC0003DMT400040760 Potato mitochondrion, plastid 85.44 85.44
Solyc05g053670.2.1 Tomato nucleus 85.44 85.44
VIT_07s0005g06490.t01 Wine grape cytosol 85.44 85.44
VIT_15s0021g00760.t01 Wine grape mitochondrion 47.57 85.22
GSMUA_Achr6P08790_001 Banana cytosol 57.28 84.29
VIT_05s0029g00020.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 83.98 83.98
Bra036669.1-P Field mustard cytosol 83.5 83.5
CDY03292 Canola cytosol 83.5 83.5
CDY39786 Canola cytosol 83.5 83.5
AT5G48760.1 Thale cress cytosol 83.5 83.5
CDY52083 Canola cytosol 83.01 83.01
CDY33947 Canola cytosol 83.01 83.01
CDY05663 Canola cytosol 83.01 83.01
CDY00046 Canola cytosol 83.01 83.01
CDX86281 Canola cytosol 83.01 83.01
CDX85362 Canola cytosol 83.01 83.01
CDX77383 Canola cytosol 83.01 83.01
Bra036161.1-P Field mustard cytosol 83.01 83.01
PGSC0003DMT400096774 Potato mitochondrion, plastid 80.58 82.59
CDY15113 Canola cytosol 82.52 82.52
CDX93039 Canola cytosol 82.52 82.52
Bra020681.1-P Field mustard cytosol 82.52 82.52
Bra015088.1-P Field mustard cytosol 82.52 82.52
Bra013239.1-P Field mustard cytosol 82.52 82.52
AT3G24830.1 Thale cress cytosol 81.55 81.55
GSMUA_Achr3P13700_001 Banana mitochondrion 42.72 81.48
AT4G13170.1 Thale cress cytosol 81.07 81.07
Solyc09g091740.2.1 Tomato nucleus 84.95 81.02
Zm00001d034059_P006 Maize cytosol 93.2 80.67
AT3G07110.2 Thale cress cytosol 80.58 80.19
CDY19938 Canola mitochondrion 40.29 72.81
GSMUA_Achr6P08770_001 Banana cytosol, golgi, plastid 11.65 72.73
TraesCS5A01G541100.1 Wheat cytosol, mitochondrion 37.86 71.56
Os03t0755700-00 Rice nucleus 43.69 68.18
KRH25477 Soybean nucleus 17.48 59.02
Protein Annotations
MapMan:17.1.2.1.14Gene3D:3.90.1180.10GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015934GO:GO:0019538InterPro:IPR036899
HAMAP:MF_01366PFAM:PF00572PIRSF:PIRSF002181ScanProsite:PS00783PANTHER:PTHR11545PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13InterPro:Ribosomal_L13_CSInterPro:Ribosomal_L13_euk/arcInterPro:Ribosomal_L13_sfSUPFAM:SSF52161TIGRFAMs:TIGR01077
EnsemblPlantsGene:TraesCS5A01G392900EnsemblPlants:TraesCS5A01G392900.1TIGR:cd00392SEG:seg::
Description
No Description!
Coordinates
chr5A:+:588852154..588854290
Molecular Weight (calculated)
23531.4 Da
IEP (calculated)
11.040
GRAVY (calculated)
-0.416
Length
206 amino acids
Sequence
(BLAST)
001: MVSGSGVCAK RVVVDARHHM LGRLASIVAK ELLNGQRVVV VRCEEICMSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PAKILWRTIR GMIPHKTARG
101: EAALARLKAY EGVPPPYDRT KRMVIPDALK VLRLQPGHRY CLLGQLSKEV GWNYADTIRE LEEKRKEKAK VSYDRRKQLA KLRVKAEKAA EEKLGTQLEI
201: LAPIKY
Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Arabidopsis Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.