Factsheet for Solyc09g091740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076290	Potato	cytosol, plastid	94.44	99.03
Solyc12g098330.1.1	Tomato	nucleus, unclear	91.67	96.12
Solyc05g053670.2.1	Tomato	nucleus	91.2	95.63
VIT_15s0021g00760.t01	Wine grape	mitochondrion	47.69	89.57
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	83.8	87.86
VIT_07s0005g06490.t01	Wine grape	cytosol	83.33	87.38
EES17613	Sorghum	mitochondrion	83.33	87.38
CDY52083	Canola	cytosol	82.87	86.89
EER93429	Sorghum	cytosol	82.87	86.89
CDX77383	Canola	cytosol	82.87	86.89
CDY03292	Canola	cytosol	82.41	86.41
AT5G48760.1	Thale cress	cytosol	82.41	86.41
CDY39786	Canola	cytosol	82.41	86.41
Bra036669.1-P	Field mustard	cytosol	82.41	86.41
Bra015088.1-P	Field mustard	cytosol	82.41	86.41
CDX93039	Canola	cytosol	81.94	85.92
CDY15113	Canola	cytosol	81.94	85.92
Bra013239.1-P	Field mustard	cytosol	81.94	85.92
AT3G24830.1	Thale cress	cytosol	81.48	85.44
Zm00001d013252_P001	Maize	plasma membrane	81.48	85.44
CDX85362	Canola	cytosol	81.02	84.95
AT4G13170.1	Thale cress	cytosol	81.02	84.95
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	81.02	84.95
TraesCS5D01G402800.1	Wheat	cytosol	81.02	84.95
CDX86281	Canola	cytosol	81.02	84.95
CDY00046	Canola	cytosol	81.02	84.95
CDY05663	Canola	cytosol	81.02	84.95
Bra036161.1-P	Field mustard	cytosol	81.02	84.95
CDY33947	Canola	cytosol	81.02	84.95
AT3G07110.2	Thale cress	cytosol	81.02	84.54
Bra020681.1-P	Field mustard	cytosol	80.56	84.47
KRH36792	Soybean	nucleus	80.56	84.47
KRH46742	Soybean	nucleus	80.56	84.47
TraesCS5B01G397800.1	Wheat	cytosol	80.56	84.47
GSMUA_Achr10P...	Banana	mitochondrion	70.37	84.44
GSMUA_Achr6P23390_001	Banana	cytosol	54.63	84.29
KRH07489	Soybean	nucleus	80.09	83.98
GSMUA_Achr6P15590_001	Banana	mitochondrion	69.91	83.89
GSMUA_Achr3P17910_001	Banana	mitochondrion	69.91	83.89
HORVU2Hr1G063880.5	Barley	mitochondrion	79.17	83.01
GSMUA_Achr6P08790_001	Banana	cytosol	53.7	82.86
KRH46743	Soybean	cytosol	78.7	82.52
TraesCS2B01G281300.1	Wheat	mitochondrion	78.24	82.04
KRH11781	Soybean	nucleus	77.78	81.55
TraesCS2A01G260700.1	Wheat	golgi, unclear	77.31	81.07
GSMUA_Achr3P13700_001	Banana	mitochondrion	40.28	80.56
TraesCS2D01G263000.1	Wheat	mitochondrion	75.93	79.61
Os11t0425800-01	Rice	mitochondrion	24.54	75.71
CDY19938	Canola	mitochondrion	39.81	75.44
Zm00001d034059_P006	Maize	cytosol	82.87	75.21
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	16.2	72.92
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	33.8	66.97
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	10.19	66.67
Os03t0755700-00	Rice	nucleus	38.43	62.88

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR036899	UniProt:K4CWK0	HAMAP:MF_01366	PFAM:PF00572	ScanProsite:PS00783	PANTHER:PTHR11545
PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161
EnsemblPlantsGene:Solyc09g091740.2	EnsemblPlants:Solyc09g091740.2.1	TIGRFAMs:TIGR01077	UniParc:UPI000276B77D	:	:

Description

No Description!

Coordinates

chr9:-:70966760..70969395

Molecular Weight (calculated)

24643.0 Da

IEP (calculated)

11.396

GRAVY (calculated)

-0.288

Length

216 amino acids

Sequence
(BLAST)

001: MVSGSGISAK RIVVDARHHM LGRLSSILAK ELLNGQRVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKVY EGVPPPYDKI KRMVIPDALK VLRLRAGHKY CLLGKLSSEV GWNHYDTIRD LENKRKERAQ VTYERRKQLA KLRVKAEKAA EEKLGPQLAV
201: IAPINLFLVR GCTLHF

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.