CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	EES01073	AT2G42580.1	19000166
AT3G24830.1	EES02247	AT2G42580.1	19000166
AT3G24830.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17613	Sorghum	mitochondrion	99.03	99.03
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	92.23	92.23
TraesCS5D01G402800.1	Wheat	cytosol	92.23	92.23
TraesCS5B01G397800.1	Wheat	cytosol	91.75	91.75
PGSC0003DMT400019917	Potato	mitochondrion	88.35	88.35
Solyc12g098330.1.1	Tomato	nucleus, unclear	88.35	88.35
PGSC0003DMT400076290	Potato	cytosol, plastid	87.86	87.86
PGSC0003DMT400040760	Potato	mitochondrion, plastid	87.86	87.86
Solyc05g053670.2.1	Tomato	nucleus	87.86	87.86
VIT_15s0021g00760.t01	Wine grape	mitochondrion	48.54	86.96
GSMUA_Achr6P15590_001	Banana	mitochondrion	75.73	86.67
GSMUA_Achr10P...	Banana	mitochondrion	75.73	86.67
VIT_07s0005g06490.t01	Wine grape	cytosol	86.41	86.41
GSMUA_Achr3P17910_001	Banana	mitochondrion	75.24	86.11
CDY03292	Canola	cytosol	85.92	85.92
Bra036669.1-P	Field mustard	cytosol	85.92	85.92
CDY39786	Canola	cytosol	85.92	85.92
GSMUA_Achr6P23390_001	Banana	cytosol	58.25	85.71
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	85.44	85.44
PGSC0003DMT400096774	Potato	mitochondrion, plastid	83.01	85.07
AT5G48760.1	Thale cress	cytosol	84.95	84.95
Zm00001d034059_P006	Maize	cytosol	98.06	84.87
GSMUA_Achr6P08790_001	Banana	cytosol	57.28	84.29
CDX85362	Canola	cytosol	83.98	83.98
Bra013239.1-P	Field mustard	cytosol	83.98	83.98
Bra036161.1-P	Field mustard	cytosol	83.98	83.98
CDY52083	Canola	cytosol	83.98	83.98
CDY33947	Canola	cytosol	83.98	83.98
CDY15113	Canola	cytosol	83.98	83.98
CDY05663	Canola	cytosol	83.98	83.98
CDY00046	Canola	cytosol	83.98	83.98
CDX93039	Canola	cytosol	83.98	83.98
CDX86281	Canola	cytosol	83.98	83.98
CDX77383	Canola	cytosol	83.98	83.98
AT3G24830.1	Thale cress	cytosol	83.5	83.5
Bra020681.1-P	Field mustard	cytosol	83.5	83.5
Bra015088.1-P	Field mustard	cytosol	83.5	83.5
Solyc09g091740.2.1	Tomato	nucleus	86.89	82.87
AT4G13170.1	Thale cress	cytosol	82.52	82.52
Os11t0425800-01	Rice	mitochondrion	27.67	81.43
AT3G07110.2	Thale cress	cytosol	81.55	81.16
GSMUA_Achr3P13700_001	Banana	mitochondrion	41.26	78.7
CDY19938	Canola	mitochondrion	42.23	76.32
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	10.68	66.67
Os03t0755700-00	Rice	nucleus	41.75	65.15
KRH25477	Soybean	nucleus	18.45	62.3

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	EntrezGene:8085922	ProteinID:AAM47582.1	EnsemblPlants:EER93429	ProteinID:EER93429
ProteinID:EER93429.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	InterPro:IPR036899	HAMAP:MF_01366
PFAM:PF00572	PIRSF:PIRSF002181	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	UniProt:Q8LKU3	InterPro:Ribosomal_L13
InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	EnsemblPlantsGene:SORBI_3001G085400	SUPFAM:SSF52161	unigene:Sbi.19631	TIGRFAMs:TIGR01077
UniParc:UPI000009DD40	RefSeq:XP_002466431.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6587072..6588928

Molecular Weight (calculated)

23643.6 Da

IEP (calculated)

10.900

GRAVY (calculated)

-0.483

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGVCAK RIVVDARHHM LGRLSSIIAK ELLNGQKVVV VRCEEICMSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: EAALARLKTY EGVPPPYDKT KRVVIPDALK VLRLQPGHKY CLLGELSKEV GWNYHDTIRE LEEKRKEKAK VAYERRKQLA KLRVKAEKTA EEKLGSQLEI
201: LAPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.