Factsheet for PGSC0003DMT400096774

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040760	Potato	mitochondrion, plastid	96.02	93.69
PGSC0003DMT400019917	Potato	mitochondrion	96.02	93.69
Solyc05g053670.2.1	Tomato	nucleus	95.52	93.2
PGSC0003DMT400076290	Potato	cytosol, plastid	93.53	91.26
VIT_15s0021g00760.t01	Wine grape	mitochondrion	50.75	88.7
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	87.06	84.95
VIT_07s0005g06490.t01	Wine grape	cytosol	87.06	84.95
AT5G48760.1	Thale cress	cytosol	85.57	83.5
CDX77383	Canola	cytosol	85.57	83.5
EES17613	Sorghum	mitochondrion	85.57	83.5
CDY52083	Canola	cytosol	85.57	83.5
EER93429	Sorghum	cytosol	85.07	83.01
CDY39786	Canola	cytosol	85.07	83.01
CDY03292	Canola	cytosol	85.07	83.01
Bra015088.1-P	Field mustard	cytosol	85.07	83.01
Bra036669.1-P	Field mustard	cytosol	85.07	83.01
GSMUA_Achr10P...	Banana	mitochondrion	74.13	82.78
CDY05663	Canola	cytosol	84.58	82.52
AT3G24830.1	Thale cress	cytosol	84.58	82.52
AT4G13170.1	Thale cress	cytosol	84.58	82.52
Bra013239.1-P	Field mustard	cytosol	84.58	82.52
Bra036161.1-P	Field mustard	cytosol	84.58	82.52
CDX93039	Canola	cytosol	84.58	82.52
CDY33947	Canola	cytosol	84.58	82.52
CDY15113	Canola	cytosol	84.58	82.52
CDX85362	Canola	cytosol	84.58	82.52
CDX86281	Canola	cytosol	84.58	82.52
CDY00046	Canola	cytosol	84.58	82.52
GSMUA_Achr6P15590_001	Banana	mitochondrion	73.63	82.22
GSMUA_Achr6P23390_001	Banana	cytosol	57.21	82.14
Bra020681.1-P	Field mustard	cytosol	84.08	82.04
Zm00001d013252_P001	Maize	plasma membrane	84.08	82.04
AT3G07110.2	Thale cress	cytosol	83.58	81.16
GSMUA_Achr3P17910_001	Banana	mitochondrion	72.64	81.11
HORVU2Hr1G063880.5	Barley	mitochondrion	82.59	80.58
KRH46742	Soybean	nucleus	82.59	80.58
TraesCS5D01G402800.1	Wheat	cytosol	82.59	80.58
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	82.59	80.58
GSMUA_Achr3P13700_001	Banana	mitochondrion	43.28	80.56
KRH07489	Soybean	nucleus	82.09	80.1
TraesCS5B01G397800.1	Wheat	cytosol	82.09	80.1
KRH36792	Soybean	nucleus	82.09	80.1
GSMUA_Achr6P08790_001	Banana	cytosol	55.72	80.0
TraesCS2B01G281300.1	Wheat	mitochondrion	81.59	79.61
TraesCS2A01G260700.1	Wheat	golgi, unclear	80.6	78.64
KRH46743	Soybean	cytosol	80.6	78.64
KRH11781	Soybean	nucleus	79.6	77.67
TraesCS2D01G263000.1	Wheat	mitochondrion	79.1	77.18
CDY19938	Canola	mitochondrion	43.28	76.32
Os11t0425800-01	Rice	mitochondrion	25.37	72.86
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	11.94	72.73
Zm00001d034059_P006	Maize	cytosol	85.07	71.85
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	15.42	64.58
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	34.83	64.22
Os03t0755700-00	Rice	nucleus	39.3	59.85

Protein Annotations

EntrezGene:102580700	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0030529	InterPro:IPR036899	UniProt:M1DZ78	HAMAP:MF_01366	PFAM:PF00572	EnsemblPlantsGene:PGSC0003DMG400046345
PGSC:PGSC0003DMG400046345	EnsemblPlants:PGSC0003DMT400096774	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077
UniParc:UPI00029577FB	RefSeq:XP_015162594.1	:	:	:	:

Description

60S ribosomal protein L13a [Source:PGSC_GENE;Acc:PGSC0003DMG400046345]

Coordinates

chr8:-:56848993..56849598

Molecular Weight (calculated)

22884.6 Da

IEP (calculated)

10.982

GRAVY (calculated)

-0.367

Length

201 amino acids

Sequence
(BLAST)

001: MVSGSGISAR RIVVDARHHM LGRLSSILAK ELLNGQRVVV VRCEEICLSG GLVHQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAVLACLKVY EGVPPPYDKI KRMVIPDALK VLKLQAGHKY CLLGKLSSEV GWNHYDTIKE LENKRKERTQ VAYERRKQLA KLRVKAEKAA EETLGPQLAS
201: Y

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.