CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	KRH22291	AT2G42580.1	19000166
AT3G24830.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36792	Soybean	nucleus	96.6	96.6
KRH07489	Soybean	nucleus	95.15	95.15
KRH46742	Soybean	nucleus	92.72	92.72
KRH46743	Soybean	cytosol	90.78	90.78
VIT_07s0005g06490.t01	Wine grape	cytosol	88.35	88.35
Bra036669.1-P	Field mustard	cytosol	87.86	87.86
CDY39786	Canola	cytosol	87.86	87.86
CDY03292	Canola	cytosol	87.86	87.86
AT5G48760.1	Thale cress	cytosol	87.38	87.38
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.89	86.89
AT4G13170.1	Thale cress	cytosol	86.41	86.41
VIT_15s0021g00760.t01	Wine grape	mitochondrion	48.06	86.09
AT3G07110.2	Thale cress	cytosol	86.41	85.99
CDY33947	Canola	cytosol	85.92	85.92
CDY52083	Canola	cytosol	85.92	85.92
CDY00046	Canola	cytosol	85.92	85.92
CDX86281	Canola	cytosol	85.92	85.92
CDX85362	Canola	cytosol	85.92	85.92
CDY05663	Canola	cytosol	85.92	85.92
CDX77383	Canola	cytosol	85.92	85.92
Bra036161.1-P	Field mustard	cytosol	85.92	85.92
Bra020681.1-P	Field mustard	cytosol	85.44	85.44
AT3G24830.1	Thale cress	cytosol	85.44	85.44
Bra013239.1-P	Field mustard	cytosol	85.44	85.44
Bra015088.1-P	Field mustard	cytosol	85.44	85.44
CDX93039	Canola	cytosol	85.44	85.44
CDY15113	Canola	cytosol	85.44	85.44
PGSC0003DMT400019917	Potato	mitochondrion	82.52	82.52
PGSC0003DMT400076290	Potato	cytosol, plastid	82.52	82.52
Solyc12g098330.1.1	Tomato	nucleus, unclear	82.52	82.52
PGSC0003DMT400040760	Potato	mitochondrion, plastid	82.04	82.04
Solyc05g053670.2.1	Tomato	nucleus	82.04	82.04
PGSC0003DMT400096774	Potato	mitochondrion, plastid	77.67	79.6
Solyc09g091740.2.1	Tomato	nucleus	81.55	77.78
CDY19938	Canola	mitochondrion	42.72	77.19
KRH25477	Soybean	nucleus	20.39	68.85

Protein Annotations

EntrezGene:100808497	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	EMBL:ACUP02009238	EnsemblPlantsGene:GLYMA_15G130000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	UniProt:I1MG34	InterPro:IPR036899	EnsemblPlants:KRH11781
ProteinID:KRH11781	ProteinID:KRH11781.1	HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783
PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf
SUPFAM:SSF52161	TIGRFAMs:TIGR01077	UniParc:UPI000233BA06	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:10438983..10440540

Molecular Weight (calculated)

23542.5 Da

IEP (calculated)

10.986

GRAVY (calculated)

-0.382

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGICAK RVVVDARHHM LGRLASIVAK ELLNGQKVAV VRCEEICISG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PAKIFWRTVR GMIPHKTKRG
101: EAALARLKVY EGIPPPYDKT KRMVVPDALK VLRLQKGHKY CVLGRLSPEV GWSYYDTIRE LEKKRKEKAE LVYARKKQLN KLRVKAEKVA EEKLGSQLDV
201: LAAVKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.