Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_12s0028g02240.t01 | |
VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G24830.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
AT3G24830.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 20.87 | 72.73 |
Os11t0425800-01 | Rice | mitochondrion | 42.61 | 70.0 |
GSMUA_Achr6P23390_001 | Banana | cytosol | 80.0 | 65.71 |
GSMUA_Achr6P08790_001 | Banana | cytosol | 79.13 | 65.0 |
Os03t0755700-00 | Rice | nucleus | 69.57 | 60.61 |
CDY19938 | Canola | mitochondrion | 54.78 | 55.26 |
VIT_07s0005g06490.t01 | Wine grape | cytosol | 95.65 | 53.4 |
VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 93.91 | 52.43 |
GSMUA_Achr10P... | Banana | mitochondrion | 80.87 | 51.67 |
GSMUA_Achr3P17910_001 | Banana | mitochondrion | 80.0 | 51.11 |
GSMUA_Achr6P15590_001 | Banana | mitochondrion | 80.0 | 51.11 |
PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 88.7 | 50.75 |
PGSC0003DMT400019917 | Potato | mitochondrion | 90.43 | 50.49 |
PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 90.43 | 50.49 |
PGSC0003DMT400076290 | Potato | cytosol, plastid | 89.57 | 50.0 |
Solyc05g053670.2.1 | Tomato | nucleus | 89.57 | 50.0 |
Solyc12g098330.1.1 | Tomato | nucleus, unclear | 89.57 | 50.0 |
AT3G24830.1 | Thale cress | cytosol | 87.83 | 49.03 |
Zm00001d013252_P001 | Maize | plasma membrane | 87.83 | 49.03 |
CDY39786 | Canola | cytosol | 87.83 | 49.03 |
AT4G13170.1 | Thale cress | cytosol | 87.83 | 49.03 |
AT5G48760.1 | Thale cress | cytosol | 87.83 | 49.03 |
CDY03292 | Canola | cytosol | 87.83 | 49.03 |
Bra036669.1-P | Field mustard | cytosol | 87.83 | 49.03 |
CDY52083 | Canola | cytosol | 86.96 | 48.54 |
Bra013239.1-P | Field mustard | cytosol | 86.96 | 48.54 |
Bra015088.1-P | Field mustard | cytosol | 86.96 | 48.54 |
Bra020681.1-P | Field mustard | cytosol | 86.96 | 48.54 |
Bra036161.1-P | Field mustard | cytosol | 86.96 | 48.54 |
CDX77383 | Canola | cytosol | 86.96 | 48.54 |
CDX85362 | Canola | cytosol | 86.96 | 48.54 |
CDX86281 | Canola | cytosol | 86.96 | 48.54 |
KRH36792 | Soybean | nucleus | 86.96 | 48.54 |
KRH07489 | Soybean | nucleus | 86.96 | 48.54 |
EER93429 | Sorghum | cytosol | 86.96 | 48.54 |
EES17613 | Sorghum | mitochondrion | 86.96 | 48.54 |
CDY33947 | Canola | cytosol | 86.96 | 48.54 |
CDY15113 | Canola | cytosol | 86.96 | 48.54 |
CDY05663 | Canola | cytosol | 86.96 | 48.54 |
CDY00046 | Canola | cytosol | 86.96 | 48.54 |
CDX93039 | Canola | cytosol | 86.96 | 48.54 |
KRH11781 | Soybean | nucleus | 86.09 | 48.06 |
KRH46742 | Soybean | nucleus | 86.09 | 48.06 |
Solyc09g091740.2.1 | Tomato | nucleus | 89.57 | 47.69 |
KRH46743 | Soybean | cytosol | 85.22 | 47.57 |
TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 85.22 | 47.57 |
TraesCS5D01G402800.1 | Wheat | cytosol | 85.22 | 47.57 |
TraesCS5B01G397800.1 | Wheat | cytosol | 85.22 | 47.57 |
AT3G07110.2 | Thale cress | cytosol | 85.22 | 47.34 |
HORVU2Hr1G063880.5 | Barley | mitochondrion | 82.61 | 46.12 |
TraesCS2B01G281300.1 | Wheat | mitochondrion | 80.87 | 45.15 |
TraesCS2D01G263000.1 | Wheat | mitochondrion | 80.0 | 44.66 |
TraesCS2A01G260700.1 | Wheat | golgi, unclear | 80.0 | 44.66 |
Zm00001d034059_P006 | Maize | cytosol | 86.96 | 42.02 |
GSMUA_Achr3P13700_001 | Banana | mitochondrion | 38.26 | 40.74 |
TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 34.78 | 36.7 |
HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 6.96 | 16.67 |
Protein Annotations
MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | ProteinID:CCB43930 | ProteinID:CCB43930.1 | UniProt:F6GVE7 | EMBL:FN594952 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0015934 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR036899 | PFAM:PF00572 |
PIRSF:PIRSF002181 | ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS |
InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI000210A60C | ArrayExpress:VIT_15s0021g00760 |
EnsemblPlantsGene:VIT_15s0021g00760 | EnsemblPlants:VIT_15s0021g00760.t01 | RefSeq:XP_002267951 | RefSeq:XP_002267951.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr15:+:10574193..10574605
Molecular Weight (calculated)
13616.2 Da
IEP (calculated)
11.652
GRAVY (calculated)
-0.670
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYLRFLRKR MNTKPSHGPI HFRAPSKILW RTIRGMIPHK TKRGAATLAR LKAYEGIPPP YDKMKRMVIP DALKVLRLQA GHKYCLLGRL SLEVGWNHYD
101: TIRELEKKRK ERRLA
101: TIRELEKKRK ERRLA
001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
Arabidopsis Description
RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.