Factsheet for GSMUA_Achr6P23390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08790_001	Banana	cytosol	95.71	95.71
VIT_15s0021g00760.t01	Wine grape	mitochondrion	65.71	80.0
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	27.14	79.17
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	18.57	78.79
GSMUA_Achr10P...	Banana	mitochondrion	97.14	75.56
CDY19938	Canola	mitochondrion	61.43	75.44
GSMUA_Achr6P15590_001	Banana	mitochondrion	95.71	74.44
Os11t0425800-01	Rice	mitochondrion	37.14	74.29
GSMUA_Achr3P17910_001	Banana	mitochondrion	95.0	73.89
Os03t0755700-00	Rice	nucleus	61.43	65.15
PGSC0003DMT400040760	Potato	mitochondrion, plastid	87.14	59.22
PGSC0003DMT400019917	Potato	mitochondrion	87.14	59.22
Solyc05g053670.2.1	Tomato	nucleus	87.14	59.22
Solyc12g098330.1.1	Tomato	nucleus, unclear	87.14	59.22
Zm00001d013252_P001	Maize	plasma membrane	86.43	58.74
AT5G48760.1	Thale cress	cytosol	85.71	58.25
VIT_07s0005g06490.t01	Wine grape	cytosol	85.71	58.25
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	85.71	58.25
TraesCS5D01G402800.1	Wheat	cytosol	85.71	58.25
EER93429	Sorghum	cytosol	85.71	58.25
EES17613	Sorghum	mitochondrion	85.71	58.25
TraesCS5B01G397800.1	Wheat	cytosol	85.0	57.77
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	85.0	57.77
KRH25477	Soybean	nucleus	25.0	57.38
PGSC0003DMT400076290	Potato	cytosol, plastid	84.29	57.28
PGSC0003DMT400096774	Potato	mitochondrion, plastid	82.14	57.21
HORVU2Hr1G063880.5	Barley	mitochondrion	83.57	56.8
TraesCS2B01G281300.1	Wheat	mitochondrion	83.57	56.8
AT3G24830.1	Thale cress	cytosol	83.57	56.8
CDY33947	Canola	cytosol	83.57	56.8
CDY15113	Canola	cytosol	83.57	56.8
CDY05663	Canola	cytosol	83.57	56.8
Bra013239.1-P	Field mustard	cytosol	83.57	56.8
CDX93039	Canola	cytosol	83.57	56.8
CDX85362	Canola	cytosol	83.57	56.8
AT4G13170.1	Thale cress	cytosol	83.57	56.8
Bra036161.1-P	Field mustard	cytosol	82.86	56.31
Bra036669.1-P	Field mustard	cytosol	82.86	56.31
Bra020681.1-P	Field mustard	cytosol	82.86	56.31
TraesCS2A01G260700.1	Wheat	golgi, unclear	82.86	56.31
CDX86281	Canola	cytosol	82.86	56.31
CDY00046	Canola	cytosol	82.86	56.31
CDY03292	Canola	cytosol	82.86	56.31
CDY39786	Canola	cytosol	82.86	56.31
AT3G07110.2	Thale cress	cytosol	82.86	56.04
CDY52083	Canola	cytosol	82.14	55.83
CDX77383	Canola	cytosol	82.14	55.83
Bra015088.1-P	Field mustard	cytosol	81.43	55.34
TraesCS2D01G263000.1	Wheat	mitochondrion	80.71	54.85
Solyc09g091740.2.1	Tomato	nucleus	84.29	54.63
Zm00001d034059_P006	Maize	cytosol	87.14	51.26
GSMUA_Achr3P13700_001	Banana	mitochondrion	25.71	33.33
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	23.57	30.28

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G23390_001
EnsemblPlants:GSMUA_Achr6P23390_001	EnsemblPlants:GSMUA_Achr6T23390_001	InterPro:IPR036899	UniProt:M0T9I7	PIRSF:PIRSF002181	ScanProsite:PS00783
PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf
SUPFAM:SSF52161	TIGRFAMs:TIGR01077	UniParc:UPI000295CDC1	SEG:seg	:	:

Description

60S ribosomal protein L13a-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23390_001]

Coordinates

chr6:-:23587201..23589914

Molecular Weight (calculated)

16141.1 Da

IEP (calculated)

10.912

GRAVY (calculated)

-0.601

Length

140 amino acids

Sequence
(BLAST)

001: MNTKPSHGPI HFRAPAKILW RTIRGMIPHK TKRGAAALAR LKAYEGVPPP YDKIKRMVIP DALKVLRLQP GHRYCLLGRL SSEVGWNYYD TVKELEAKRK
101: ERAKVAYERR KQLTKLRLKA EKAAEEKLGS QLDILLPLNY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.