CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	32.79	41.67
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	21.31	39.39
GSMUA_Achr6P23390_001	Banana	cytosol	57.38	25.0
GSMUA_Achr6P08790_001	Banana	cytosol	55.74	24.29
KRH07489	Soybean	nucleus	75.41	22.33
KRH36792	Soybean	nucleus	70.49	20.87
KRH46743	Soybean	cytosol	68.85	20.39
KRH46742	Soybean	nucleus	68.85	20.39
KRH11781	Soybean	nucleus	68.85	20.39
Os11t0425800-01	Rice	mitochondrion	22.95	20.0
GSMUA_Achr10P...	Banana	mitochondrion	57.38	19.44
GSMUA_Achr6P15590_001	Banana	mitochondrion	55.74	18.89
EES17613	Sorghum	mitochondrion	62.3	18.45
EER93429	Sorghum	cytosol	62.3	18.45
GSMUA_Achr3P17910_001	Banana	mitochondrion	54.1	18.33
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	59.02	17.48
TraesCS5B01G397800.1	Wheat	cytosol	59.02	17.48
TraesCS5D01G402800.1	Wheat	cytosol	59.02	17.48
Zm00001d013252_P001	Maize	plasma membrane	59.02	17.48
HORVU2Hr1G063880.5	Barley	mitochondrion	57.38	16.99
TraesCS2B01G281300.1	Wheat	mitochondrion	55.74	16.5
Zm00001d034059_P006	Maize	cytosol	63.93	16.39
TraesCS2D01G263000.1	Wheat	mitochondrion	54.1	16.02
TraesCS2A01G260700.1	Wheat	golgi, unclear	52.46	15.53
Os03t0755700-00	Rice	nucleus	31.15	14.39
GSMUA_Achr3P13700_001	Banana	mitochondrion	0.0	0.0
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A0R0HE07	EMBL:ACUP02007264	EnsemblPlantsGene:GLYMA_12G106300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0022625	EnsemblPlants:KRH25477	ProteinID:KRH25477	ProteinID:KRH25477.1	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3
InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_euk/arc	UniParc:UPI0006ED504C	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:9703027..9704597

Molecular Weight (calculated)

7334.2 Da

IEP (calculated)

10.592

GRAVY (calculated)

-0.482

Length

61 amino acids

Sequence
(BLAST)

1: MLGHKYCILG RLSSEVGWNL FDIIRELEKK RKDKAQLVYE RKKHLNNLRV KAEKLQFVVL H

Best Arabidopsis Sequence Match ( AT5G48760.1 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.