Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 95.56 | 95.56 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 73.89 | 95.0 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 73.89 | 95.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 95.0 | 95.0 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 15.0 | 81.82 |
| Os11t0425800-01 | Rice | mitochondrion | 31.67 | 81.43 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 51.11 | 80.0 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 21.11 | 79.17 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 87.78 | 76.7 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 87.78 | 76.7 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 87.22 | 76.21 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 87.22 | 76.21 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 86.67 | 75.73 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 86.11 | 75.24 |
| Zm00001d013252_P001 | Maize | plasma membrane | 86.11 | 75.24 |
| EER93429 | Sorghum | cytosol | 86.11 | 75.24 |
| EES17613 | Sorghum | mitochondrion | 86.11 | 75.24 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 86.11 | 75.24 |
| AT5G48760.1 | Thale cress | cytosol | 85.56 | 74.76 |
| CDY15113 | Canola | cytosol | 85.56 | 74.76 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 85.56 | 74.76 |
| Solyc05g053670.2.1 | Tomato | nucleus | 85.56 | 74.76 |
| CDX93039 | Canola | cytosol | 85.56 | 74.76 |
| Bra013239.1-P | Field mustard | cytosol | 85.56 | 74.76 |
| CDY19938 | Canola | mitochondrion | 47.22 | 74.56 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 85.0 | 74.27 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 85.0 | 74.27 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 85.0 | 74.27 |
| CDY39786 | Canola | cytosol | 84.44 | 73.79 |
| Bra036669.1-P | Field mustard | cytosol | 84.44 | 73.79 |
| CDX77383 | Canola | cytosol | 84.44 | 73.79 |
| CDY03292 | Canola | cytosol | 84.44 | 73.79 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 84.44 | 73.79 |
| CDY52083 | Canola | cytosol | 84.44 | 73.79 |
| AT3G24830.1 | Thale cress | cytosol | 83.89 | 73.3 |
| CDY33947 | Canola | cytosol | 83.89 | 73.3 |
| CDY05663 | Canola | cytosol | 83.89 | 73.3 |
| CDY00046 | Canola | cytosol | 83.89 | 73.3 |
| CDX86281 | Canola | cytosol | 83.89 | 73.3 |
| Bra015088.1-P | Field mustard | cytosol | 83.89 | 73.3 |
| CDX85362 | Canola | cytosol | 83.89 | 73.3 |
| Bra036161.1-P | Field mustard | cytosol | 83.89 | 73.3 |
| AT4G13170.1 | Thale cress | cytosol | 83.33 | 72.82 |
| Bra020681.1-P | Field mustard | cytosol | 83.33 | 72.82 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 81.11 | 72.64 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 82.78 | 72.33 |
| AT3G07110.2 | Thale cress | cytosol | 82.22 | 71.5 |
| Solyc09g091740.2.1 | Tomato | nucleus | 83.89 | 69.91 |
| Zm00001d034059_P006 | Maize | cytosol | 87.22 | 65.97 |
| Os03t0755700-00 | Rice | nucleus | 47.78 | 65.15 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 37.78 | 62.96 |
| KRH25477 | Soybean | nucleus | 18.33 | 54.1 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 28.89 | 47.71 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr3G17910_001 |
| EnsemblPlants:GSMUA_Achr3P17910_001 | EnsemblPlants:GSMUA_Achr3T17910_001 | InterPro:IPR036899 | UniProt:M0SFK7 | PIRSF:PIRSF002181 | ScanProsite:PS00783 |
| PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf |
| SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI000295E374 | SEG:seg | : | : |
Description
60S ribosomal protein L13a-4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17910_001]
Coordinates
chr3:+:19385200..19387143
Molecular Weight (calculated)
20483.7 Da
IEP (calculated)
11.098
GRAVY (calculated)
-0.402
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGLCAK RVVVDARHHM LGRLASILAK ELLNGQRVVR MNTKPSHGPI HFRAPAKILW RTIRGMIPHK TKRGAAALAR LKAYEGVPPP YDKMKRMVIP
101: DALKVLRLQP GHRYCLLGRL SSEVGWNYYD TVKVLEEKRK ERAKVAYERR KQLTKLKLKA EKAVEEKLGS QLDILAPLKY
101: DALKVLRLQP GHRYCLLGRL SSEVGWNYYD TVKVLEEKRK ERAKVAYERR KQLTKLKLKA EKAVEEKLGS QLDILAPLKY
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Arabidopsis Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.