Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24830.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT3G24830.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03292 | Canola | cytosol | 100.0 | 100.0 |
| CDY39786 | Canola | cytosol | 100.0 | 100.0 |
| Bra015088.1-P | Field mustard | cytosol | 97.57 | 97.57 |
| Bra013239.1-P | Field mustard | cytosol | 97.09 | 97.09 |
| AT3G24830.1 | Thale cress | cytosol | 96.12 | 96.12 |
| Bra036161.1-P | Field mustard | cytosol | 93.69 | 93.69 |
| Bra020681.1-P | Field mustard | cytosol | 93.2 | 93.2 |
| KRH36792 | Soybean | nucleus | 90.29 | 90.29 |
| KRH07489 | Soybean | nucleus | 89.81 | 89.81 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 89.32 | 89.32 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 89.32 | 89.32 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 88.35 | 88.35 |
| KRH11781 | Soybean | nucleus | 87.86 | 87.86 |
| KRH46742 | Soybean | nucleus | 87.86 | 87.86 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 87.86 | 87.86 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 87.86 | 87.86 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 49.03 | 87.83 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 87.38 | 87.38 |
| Solyc05g053670.2.1 | Tomato | nucleus | 87.38 | 87.38 |
| KRH46743 | Soybean | cytosol | 86.41 | 86.41 |
| EER93429 | Sorghum | cytosol | 85.92 | 85.92 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 85.44 | 85.44 |
| Zm00001d013252_P001 | Maize | plasma membrane | 85.44 | 85.44 |
| EES17613 | Sorghum | mitochondrion | 85.44 | 85.44 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 83.01 | 85.07 |
| GSMUA_Achr10P... | Banana | mitochondrion | 74.27 | 85.0 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 84.47 | 84.47 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 73.79 | 84.44 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 73.79 | 84.44 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 83.98 | 83.98 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 83.98 | 83.98 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 83.5 | 83.5 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 83.5 | 83.5 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 83.5 | 83.5 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 56.31 | 82.86 |
| Solyc09g091740.2.1 | Tomato | nucleus | 86.41 | 82.41 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 55.83 | 82.14 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 41.26 | 78.7 |
| Os11t0425800-01 | Rice | mitochondrion | 26.21 | 77.14 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 17.48 | 75.0 |
| Zm00001d034059_P006 | Maize | cytosol | 86.41 | 74.79 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 11.65 | 72.73 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 33.98 | 64.22 |
| Os03t0755700-00 | Rice | nucleus | 38.84 | 60.61 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | EnsemblPlantsGene:Bra036669 | EnsemblPlants:Bra036669.1 | EnsemblPlants:Bra036669.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR036899 | UniProt:M4F6F9 | HAMAP:MF_01366 |
| PFAM:PF00572 | PIRSF:PIRSF002181 | ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | InterPro:Ribosomal_L13 |
| InterPro:Ribosomal_L13_CS | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI00025420B8 |
Description
AT3G24830 (E=2e-111) | 60S ribosomal protein L13A (RPL13aB)
Coordinates
chrA09:-:5734247..5735335
Molecular Weight (calculated)
23505.6 Da
IEP (calculated)
11.070
GRAVY (calculated)
-0.323
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGICAK RVVVDARHHM LGRLASIIAK ELLNGQKVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKEKSQ AVYERKKQLI KLRTKAEKVA EEKLGSQLDV
201: LAPIKY
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKEKSQ AVYERKKQLI KLRTKAEKVA EEKLGSQLDV
201: LAPIKY
001: MVSGSGICSK RVVVDARHHM CGRLASIIAK ELLNGQSVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
101: AAALARLKVF EGVPPPYDKV KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LEVKRKERSQ ALYERKKQLT KLRAKAEKVA EEKLGSQLDV
201: LASIKY
Arabidopsis Description
RPL13AB60S ribosomal protein L13a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRX8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.