Factsheet for VIT_05s0029g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G24830.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00760.t01	Wine grape	mitochondrion	52.43	93.91
VIT_07s0005g06490.t01	Wine grape	cytosol	93.2	93.2
PGSC0003DMT400019917	Potato	mitochondrion	91.26	91.26
PGSC0003DMT400040760	Potato	mitochondrion, plastid	90.78	90.78
Solyc12g098330.1.1	Tomato	nucleus, unclear	90.78	90.78
Solyc05g053670.2.1	Tomato	nucleus	90.29	90.29
Bra036669.1-P	Field mustard	cytosol	89.32	89.32
CDY39786	Canola	cytosol	89.32	89.32
CDY03292	Canola	cytosol	89.32	89.32
KRH07489	Soybean	nucleus	88.83	88.83
AT5G48760.1	Thale cress	cytosol	88.83	88.83
PGSC0003DMT400076290	Potato	cytosol, plastid	88.83	88.83
KRH36792	Soybean	nucleus	88.35	88.35
CDY52083	Canola	cytosol	88.35	88.35
CDX77383	Canola	cytosol	88.35	88.35
Bra015088.1-P	Field mustard	cytosol	88.35	88.35
CDY15113	Canola	cytosol	87.86	87.86
CDX93039	Canola	cytosol	87.86	87.86
AT3G24830.1	Thale cress	cytosol	87.86	87.86
AT4G13170.1	Thale cress	cytosol	87.86	87.86
Bra013239.1-P	Field mustard	cytosol	87.86	87.86
GSMUA_Achr10P...	Banana	mitochondrion	76.7	87.78
PGSC0003DMT400096774	Potato	mitochondrion, plastid	84.95	87.06
CDY00046	Canola	cytosol	86.89	86.89
KRH11781	Soybean	nucleus	86.89	86.89
KRH46742	Soybean	nucleus	86.89	86.89
Bra036161.1-P	Field mustard	cytosol	86.89	86.89
CDX85362	Canola	cytosol	86.89	86.89
CDX86281	Canola	cytosol	86.89	86.89
CDY33947	Canola	cytosol	86.89	86.89
CDY05663	Canola	cytosol	86.89	86.89
GSMUA_Achr3P17910_001	Banana	mitochondrion	75.73	86.67
GSMUA_Achr6P08790_001	Banana	cytosol	58.74	86.43
Bra020681.1-P	Field mustard	cytosol	86.41	86.41
GSMUA_Achr6P15590_001	Banana	mitochondrion	75.24	86.11
AT3G07110.2	Thale cress	cytosol	86.41	85.99
KRH46743	Soybean	cytosol	85.44	85.44
EER93429	Sorghum	cytosol	85.44	85.44
GSMUA_Achr6P23390_001	Banana	cytosol	57.77	85.0
HORVU2Hr1G063880.5	Barley	mitochondrion	84.95	84.95
EES17613	Sorghum	mitochondrion	84.95	84.95
Zm00001d013252_P001	Maize	plasma membrane	84.47	84.47
TraesCS5D01G402800.1	Wheat	cytosol	83.98	83.98
TraesCS5B01G397800.1	Wheat	cytosol	83.98	83.98
TraesCS2B01G281300.1	Wheat	mitochondrion	83.98	83.98
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	83.98	83.98
Solyc09g091740.2.1	Tomato	nucleus	87.86	83.8
TraesCS2D01G263000.1	Wheat	mitochondrion	83.5	83.5
GSMUA_Achr3P13700_001	Banana	mitochondrion	43.69	83.33
TraesCS2A01G260700.1	Wheat	golgi, unclear	83.01	83.01
Os11t0425800-01	Rice	mitochondrion	26.7	78.57
CDY19938	Canola	mitochondrion	43.2	78.07
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	12.14	75.76
Zm00001d034059_P006	Maize	cytosol	86.41	74.79
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	16.99	72.92
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	35.44	66.97
Os03t0755700-00	Rice	nucleus	40.29	62.88

Protein Annotations

EntrezGene:100267451	wikigene:100267451	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	UniProt:A5BL45	EMBL:AM463302
ProteinID:CAN63603	ProteinID:CAN63603.1	ProteinID:CCB44332	ProteinID:CCB44332.1	ncoils:Coil	EMBL:FN594958
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR036899	EntrezGene:LOC100267451
wikigene:LOC100267451	HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181	ScanProsite:PS00783	PANTHER:PTHR11545
PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161
TIGR:TC51864	TIGR:TC52278	TIGRFAMs:TIGR01077	UniParc:UPI00015213EC	ArrayExpress:VIT_05s0029g00020	EnsemblPlantsGene:VIT_05s0029g00020
EnsemblPlants:VIT_05s0029g00020.t01	RefSeq:XP_002268901	RefSeq:XP_002268901.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:13951264..13954072

Molecular Weight (calculated)

23526.6 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.373

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGICAR RVVVDARHHM LGRLASILAK ELLNGQKVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKAY EGIPPPYDKM KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYETIKE LEKKRKERAE LAYERKKQLN KLRVKAEKAA VDKLGSQLDV
201: IAPIKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.